- v404 Preview 1 - 31 Aug 2020
- v404 Preview2 - 7 Sep 2020
- v404 Final - 14 Sep 2020
Code changes:
- chromAlias function enabled for custom track bed file inputs (#24396). Hiram
- Support for new mouseOver trackDb setting. Allows constructing bigBed (and related) item mouseover's from a pattern using arbitrary text and fields in the track schema (#26160). Kate
- Fix vcf color by function when in intergenic region (#26108). Christopher
- Added a "Related Tracks" section to hgc/hgTrackUi, for helping users discover new tracks (#25721). Christopher
- Now hubCheck warns for missing track description pages (#13428). Christopher
- Added bigBed support for trackDb constructed mouseOvers (#26160). Christopher
- Adjusted assembly hub build scripts to allow sequence names without changing NCBI sequence names (#23734). Hiram
- Fixed bug where keyboard shortcuts create a URL that is too long (#26140). Max
- Fixed bug in new highlight parsing code (#26166). Max
- Change for hgTracks SARS-CoV-2 only, add a footer with link to GISAID Terms and Conditions for GISAID sequences. Angie
- Ongoing work on "franklin" and lollipop displays. Brian
- Initial work adding support for Freetype fonts. Brian
- Fixed bug in udcCache routines that make SHA1 directory names for URLs that are too long. Brian
- Added support for relative URL in redirect location (#26138). Galt
- Added -partSize option to bedPartition to allow grouping multiple partitions into a range. Mark
- Documented interaction between itemRdb and maxItems hub options (#26131). Mark
- Added bigGenePredToGenePred command. Mark
Data changes:
- Ensembl v101 release loaded into genome browsers (#26145). Hiram
- Assisting with the QA procedures on neoSch1 (#19883). Hiram
- canFam5 and mm39 browsers QA ready. Hiram
- Updated SARS-CoV-2 Problematic Sites track. Angie
- Updated SARS-CoV-2 Phylogeny track. Angie
- Added potential pathogenic indels tracks (#26132). Max
- Added bloom tracks (#26201). Max
- Close to finalizing clinSub track. Brian
- ClinGen, LOVD, Decipher tracks ready for QA. Christopher
- Created COVID GWAS from COVID-19 Host Genetics Initiative track for hg38 and hg19 (#26129). Kate
- Update to GTEx landing page to include V8 track in conjunction with publication of GTEx V8 manuscripts in Science, Sep 10 issue (#22678). Kate
- Update COVID-19 landing page to include recent news in conjunction with publication of SARS-CoV-2 browser manuscript in Nature Genetics (#26195). Kate