- v405 Preview 1 - 21 Sep 2020
- v405 Preview2 - 28 Sep 2020
- v405 Final - 5 Oct 2020
Code changes:
- Showing chrom alias names on hgTracks sequence display (#24396). Hiram
- Added UI improvement on trackUi, small grey boxes around the filters so one can see where the filter UI starts and where it ends (#24850). Max
- Added new google analytics tags: log the current assembly on hgTrack load log any outbound link clicks on CGIs (#21916). Max
- New trackDb setting sampleColorFile for coloring tree in VCF+tree display (#26177). Angie
- New util vcfToBed (#25010). Christopher
- Minor fix up to otto scripts. Christopher
- Incorporated Ana input on ClinVar and ottomatized the clinvarSub table loading for the new Clinvar Submissions track made by Brian (#25405). Max
- Prototype new lrgTranscript track to add mouse over data (#24672). Hiram
- faToVcf: enhanced to handle insertions in the reference, added -noGenotypes option (#26227). Angie
- Fixing minor problem with hgBlat Blat-All handling of empty input. Galt
- Adding timeout for gfServer read and write. This will fix both the recent problem with our translated blat servers, as well as the mysterious hangs which happen occasionally and end up causing the admins to have to restart the blat servers (#26285). Galt
- Fixed htdocs makefiles to detect git and only use git if available, Does not depend on git repo when run from unzipped archive source code and there is no git repo, requested by MarkD and Max. Galt
- The htmlPage library no longer looks for HTML tags in the middle of JavaScript blocks. Jonathan
- Improved assembly hub build scripts to allow a browser build without changing sequence names to UCSC names (#24386). Hiram
- Folded in FreeType font support in hgTracks png and postscript support. Brian
- Ongoing work on Gencode V35. Brian
Data changes:
- ClinGen Gene-Disease Validity track ready for QA (#24828). Christopher
- gnomAD PEXT track ready for QA (#25869). Christopher
- Finishing touches on COVID-19 GWAS lollipop tracks. Now released (#26129). Kate
- Update COVID-19 landing page and SARS-CoV-2 description pages (add News and UCSC Nature Genetics paper reference). Kate
- Added wuhCor1 bloom lab tracks of possible antibody escape mutations in the
receptor binding domain (#26201). Max
- Added wuhCor1 weizman lab gene predictions (#26216). Max
- New sampleColorFile for SARS-CoV-2 Phylogeny track, to replace misuse of branch length as RGB (#26177). Angie
- canFam5 browser done and QA ready (#25917). Hiram
- Added chrom.sizes.txt and chromAlias.txt optional files for assembly hubs (#24396). Hiram