- v407 Preview 1 - 2 Nov 2020
- v407 Preview2 - 9 Nov 2020
- v407 Final - 16 Nov 2020
Code changes:
- hgPublicSessions has a cgi variable for automatically applying a search, &search=term (#18470). Christopher
- Make mouseovers on the OMIM track more useful (#26221). Brian
- Added support for bigLolly custom tracks (#26481). Brian
- hgGateway species search input: mention assembly accessions (#26081). Angie
- Remove unneeded fields from genome in a bottle structural variants (#24349). Christopher
- Add vcfPhasedTrio to supported hgIntegrator track types (#25873). Christopher
- hubCheck on assembly hubs now warns when twoBitPath, htmlPath and descriptionUrl are missing or are malformed (#26459). Christopher
- bigBed external link-outs in the trackDb url setting now support bigBed extra-field substitution in the form ${fieldName}, (#25010). Christopher
- Improve VCF details page: add a border to the INFO table, and make the table collapsible (#26451). Christopher
- trackDb defined mouseOvers now support ${fieldName} substitution to protect fields that happen to be substrings of other fields, such as chrom and chromStart (#25010). Christopher
- Exon number mouseover is now default off for bigBed (#25325). Max
- Exon number mouseovers now include strand and accession (#24395). Max
- Fixing malacards link on hgGene (#26446). Max
- Removing strange #EVIDENCE-START lines from the various refseq track hgc pages where summaries are shown (26454). Max
- Reversing the order of the barChart graphs on the hgc page if the charts are oriented vertically (#26461). Max
- Removing link to SOURCE from hgGene (#26452). Max
- Tiny change to hgTracks help text shown under the hgTracks image (#26490). Max
- Now chromToUcsc accepts the wiggle format. Max
- New internal-use util vcfFilter for SARS-CoV-2 work. Angie
- Added support for id in hidden shadow for cgiMakeCheckBox. fixes (#26467). Galt
- Fix subCfg.js - If the id is missing, use name instead, which is backwards compatible fixes (#26495). Galt
- Ongoing work to enable a switch from knownGene tracks to versioned gene tracks. Brian
- Do not build a default score filter on bigBeds with less than five fields. Brian
- Prevented an infinite loop if trackDb entries for MAF files include the reference species in the speciesOrder tag (#26460). Brian
- Ongoing development for a new mouse over pop up feature for wiggle data tracks (#21980). Hiram
Data changes:
- Adding wuhCor1 peptide microarray track to wuhCor1 (#26518). Max
- Adding wuhCor1 antibody escape track (#26497). Max
- Adding wuhCor1 intrahost variants track (#26465). Max
- Covid mutations track for hg38 (#26351). Max
- Added section about hgPhyloPlace to covid19.html (at David request). Angie
- Rearranged trackDb to not have a top level knownGene track. Brian
- Fleshing out bigLolly documentation (#26481). Brian
- Built MANE v0.92 (#26431) Brian
- gnomAD v2.1.1 update ready for QA (#25010). Christopher
- Finishing touches on COVID Harmful Variants track, now released, together with new COVID track group (#26351). Kate