- v410 Preview 1 - 25 Jan 2021
- v410 Preview2 - 1 Feb 2021
- v410 Final - 8 Feb 2021
Code changes:
- hgPhyloPlace: fix counting of indel bases (#26868). Angie
- VCF parser: no more hardcoding of max column limit, the files just keep growing. Angie
- Fix bug for incorrect genome size display on 'display sequences' page of hgTracks chromInfoPage (#26584). Hiram
- mouseOver popUp wiggle display adjusted to keep text box visible at all times (#21980). Hiram
- Fixed up pull down menu display result on gateway organism search function, now showing common name of species as well as the NCBI GC accession identifier (#23891). Hiram
- Changed beta and public trackDb builds to check for the existence of files referenced by bigDataUrl. Brian
- Fixed bug pslStats -overallStats calculation of mean query coverage. Mark
- Allow overlapSelect to ignore non-standard columns in BED as well as genePred and PSL, as often come with bigBed. Mark
- Support mouseOver trackDb setting for bigPsl (previously allowed but not supported) and add generic position information for bigPsl clicks, both to get LRG bigPsl otto track up to date with old version (#24672). Christopher
- Add knownCds table to list of tables automatically downloaded by GBiB (#26781). Christopher
- Suppress excess default label (default with new version of R) on bigBarChart and barChart boxplots them since we draw them on manually later anyways (#26851). Christopher
- Allow bedJoinTabOffset to index on a field other than the name field (#26837). Christopher
- Support the standard bigBed URL substitutions in bigPsl (#24672). Christopher
- Fixing right-click menu for exonNumbers on tracks (#26849). Max
- Adding BAM file format to chromToUcsc (#26839). Max
- Fixed the most pressing GBIB space issue (#26866). Max
- Efforts to make the markdown -> html conversion for mirrorManual.txt easier to use (#26934). Max
- Adding links to our _alt and _fix help docs directly to the output lines of hgBlat (#26918). Max
Data changes:
- Terminology change in SARS-CoV-2 variation track descriptions: variant --> mutation. Angie
- Ongoing updates to automated process for updating Phylogeny: Public and files used by UShER/hgPhyloPlace Angie
- On genomes blue bar pull down menu replaced 16 mouse strains with link to assembly hub gateway index page (#23891). Hiram
- Fixed up include statement of refSeqComposite.ra in trackDb files to avoid leaking of this composite table to the RR when the track isn't there yet. Using the 'alpha' tag to avoid going out (#26696). Hiram
- Removed obsolete NCBI Clone DB external URL reference for Clone End tracks (#21948). Hiram
- Assembly hub collection brought up to date with new assemblies (#23891). Hiram
- Working on V36 UCSC genes. Brian
- Finishing touches on update to TargetScan microRNA targets track with Brittney Wick. (#26287). Kate
- Fix GTEx V8 database table configuration so related tables are accessible in Table Browser (#26885). Kate
- Initial work on SARS-Cov2 Variants of Interest track (#26876). Kate
- Update wording on COVID pages and links to improve search (#26897). Kate
- Added new wuhCor1 antibody escape supertrack (#26806). Max
- Added indels to the hg19/hg38 CADD supertrack (#18492). Max
- Re-activating again the UniProt regions of interest track for all 100+ assemblies (#26889). Max