v414

Code changes:

• Auto-attach GenArk hubs if a track hub is attached that designates a non-native database found in GenArk (#27285). Brian
• Add db argument to hgc and hgTrackUi URLs so they do not trigger error messages when shared (#26892). Max
• Escape dots in track names in hgTracks.js so track names support dots (#27433). Brian
• Remove itemCount from track/list in API so we do not have to open every file (#27432). Brian
• Add UDC cache support to the API (#26947). Brian
• Fix codon-coloring case in hgTracks where db access was attempted for bigPsl track (#27312). Angie
• Extend #insert support in hgTrackDb to support variable substitution in filename. Prompted by single cell composite tracks, so subtracks can share a description page with subtrack-specific sections inserted (#27365). Kate
• Fix up hgTracks warnings to not destroy the hgTracks page layout (#27460). Max
• Add support for status command tor dynamic gfServer (#26658). Mark
• Put constants that relate to clients connecting to the new dynamic-blat gfServers in a better source file location (#27355). Galt
• Add improvements to altScaffoldPlacementToBed.pl to handle mouse properly. Galt
• Revamp chainScore to handle compiler errors and to refactor to use existing library functions and updated the makefiles, done to support work on mm10 patches. Galt
• Add git hook and installer to help users find out their file is too big when they commit. Galt
• hgPhyloPlace: add spike mutation category to spike mutation summary TSV output. Angie
• Continued polishing of new bar chart code. Jim.

Data changes:

• (New) Add revel track to hg19 (#27142). Max
• Update VGP and GenArk assemblies, new total: 1,310 assemblies. Hiram
• Update SARS-CoV-2 browser vaccine track documentation (#27312). Hiram
• Ongoing tweaks to SARS-CoV-2 big tree otto scripts. Angie