v427

Code changes:

• Reduced size of title font on hgTracks (#28788). Max
• Added support for chromAlias table in big* files (#26360). Brian
• Added comma separated output option to table browser when doing primary table or selected fields output for easy opening in excel (#27623). Chris
• Fixed barChart drawing bug where charts were drawn outside of the window if the item chromStart was less than the window chromStart (#28876). Chris
• Changed sequence logo track to come on when zoomed to 3x base mode. Brian
• Added vcf.gz as special case on hgCustom binary upload popup warning (#8155). Max
• Committed work on GenArk request form (#28930). Hiram
• Fixed multi-threading issues caused by setenv (#28844). Galt
• Fixed a multithreading issue by using timegm instead of the previous method that required setenv for TZ timezone. Galt
• Fixed the last instance of back-quoting needed for the new keyword `offset` for MariaDb upgrade (#28799). Galt
• Fixed MacOS issue with readFd where single read call cannot ask for more than 2GB (#28946). Galt
• Fixed pipe signal handling for MacOS by returning to the simple method previously used (#28948). Galt
• Made cart rewrites on by default via hg.conf, previously the cartVersion var (#28831). Brian
• Added a new option to subColumn to skip lines without a match rather than erroring out. Brian
• Added program, rmskAlignToPsl, to take repeat masker .align.tsv files and convert to PSL for use with pslMap. Mark
• Fixed an issue where hgPublicSessions would generate incorrect hyperlinks when the sessionThumbnail.imgDir and sessionThumbnail.webPath settings were turned on. Jonathan

Data changes:

• (New) Added MANE v1.0 track for hg38 (#28895). Brian
• (New) Twist exome 2.0 update released for hg19, hg38 (#28655). Max
• (New) Drug resistance mutations track for wuhCor1 (#28889). Max
• Addition of yeast K.pastoris to GenArk (#28821). Hiram
• asmEquivalent table updated in hgFixed database. Hiram
• Removed the links to PDB images in hgGene that are no longer provided (#28329). Brian