v431

Code changes:

• SQL INJECTION Prevention Version 2 protects subclauses with new %-s behavior that enforces correctness (#29274). Galt
• Hashtag '#' character now allowed in chrom names. Brian
• Made a bedGraphToWig utility for people who have made bedGraphs that could be more densely represented as wigs. Jim
• Fixed bug in gencodeVersionForGenes that made it only output one mapping of a gene that was represented on multiple haplotypes instead of a version for each haplotype. This fix also made it better about using latest version of a gencode gene when the -target option was used. Jim
• Revised barChart draw methods to better accommodate padding (and to avoid losing a bar off the edge of the graph when some filters are active) (#29425). Jonathan
• Fixed off-by-one error in Logo display (#28499). Brian
• Added code to support promoted hubs as "normal" assemblies. Brian
• Updated the GenArk request page with some additional features, including a wait cursor. Hiram
• Modified the fieldedTable code to REQUIRE that every line have same number of fields. Brian
• Users can no longer save a session without a name (apologies to Sergio Leone) (#29373)
• Added (now broken) code to support specifying a chromosome naming authority (#29421). Brian
• Added RNAplot and dot to GBIC installer. Max
• Continued updates to hgPhyloPlace. Angie

Data changes:

• (New) ba.4/5 mutations track for wuhCor1 (#29375). Max
• (New) HMC track on hg19/hg38 (#29153). Max
• (New) gnomad constraints track on hg38 (#29026). Max
• Re-established DECIPHER SNV and CNV automatic updates on hg38 (#29130). Jonathan
• Ongoing improvements to wuhCor1 big tree build process. Angie