v439

Code changes:

• Merged new search feature which displays a tree of search results with collapsible categories and adds snippets to the trix search results (#29693). Chris
• Added monkeypox to gateway tree (#30147). Brian
• Fixed hgTables and hgSearch to work with curated hubs (#30187) Brian
• Reset the name display on GenArk assembly hub gene tracks to default show the common name instead of the accession name for the gene. Hiram
• Changed wiggle mouseOver to show the value being graphed, not always the mean (#29715). Brian
• Changed to use the "mean" as default for density coverage tracks (#29715). Brian
• Added sum mode to wiggle windowing methods (#29715). Brian
• Fixed drawing of wiggle mouseover box to be in the right place and make it transparent. Brian
• hgGateway species autosuggest: expanded search of dbDb.description field (#30108). Angie
• Changed facets for GTEx single cell bar charts to those made by Jim (#29954). Chris
• pslMap now includes the mapped PSL row number in the mapInfo file to make it easy to join the two files. Mark
• Prototyped 'share this genome browser' copy link button on gateway page on some select assemblies. Hiram
• Now using the 'Reply-to' email address in place of the From: address for the assembly request system to avoid non-delivered email to some specific domain addresses running their mail system at a higher security level (#30184). Hiram
• hgPhyloPlace: major performance improvements including using a new server version of usher. Angie
• hgPhyloPlace Nextstrain linkouts: added entropy panel and filters for sample type, country, lineage/clade. Angie
• Ongoing monkeypox enhancements and bug fixes in hgPhyloPlace. Angie

Data changes:

• (Update) clinvar submissions track for hg19/hg38 (#30110). Brian
• Created mm9 to/from mm39 liftOver files per user request. Hiram
• GenArk updated added 85 assemblies, including 25 by user requests (#29545). Hiram
• Ongoing improvements to wuhCor1 big tree build process. Angie