v440

Code changes:

• Added Jim's track duplication code, which allows certain tracks to be duplicated and configured independently (#28774). Brian
• Links to AlphaFold for predicted protein structure are now displayed in hgGene when a UniProt ID is available (#29817). Jonathan
• Fixed negative strand exon number output in Table Browser (#30232). Chris
• Fixed trailing commas during table browser select fields output (#30263). Chris
• hgPcr now gives a warning if only one primer is specified (#4713). Max
• Added cart rewrite to move dbSnp153 to the archive supertrack (#30252). Brian
• Restored links to GenBank in the cross-species related genes section of hgGene (#30231). Jonathan
• Preliminary work toward supporting colors with alpha transparency in bigBed files (#30227). Jonathan
• Changed the run environment of RNAplot, so hgGene should now correctly generate and link to RNA structure images again (#30296). Jonathan
• Made small fixes to hgSearch and made hgSearch more useful for mirrors. Chris
• Fixed up kent source build to work OK on Mac OSX on arm64 architecture (#29651). Hiram
• Changed the big* file making utilities to complain if the input is not a standard file, as opposed to a pipe (#30139). Brian
• Ongoing monkeypox enhancements and bug fixes in hgPhyloPlace. Angie

Data changes:

• (Update) ClinVar submissions track on hg19/hg38 now automatically updated (#26369). Brian
• Continuous GenArk updates with 15 new assemblies including user requested genomes. (#29545). Hiram
• Ongoing improvements to wuhCor1 big tree build process. Angie