v442

- v442 Preview 1 - 19 December 2022
- v442 Preview 2 - 27 December 2022
- v442 Final - 9 January 2023

Code changes:

Improved handling of track hub error messages (#30367). Brian
Added small text under autocomplete on hgTracks telling users that [return] or "go" button trigger a full text search (#30449). Max
Added assembly aliasing via table asmAlias (#30474). Brian
Fixed bug in hgCustom custom track update procedure when 'db' value was quoted (#3201). Chris
Fixed hgVai crash on some problematic variants. When the cds start site of a transcript overlapping a variant is undefined, we can still annotate the variant as a coding variant, just not the standard frameshift,missense,etc. Related, prevent crashing when certain required structures are NULL (#29262). Chris
Fixed some small search UI bugs. Chris
Fixed barChart plots in hgc which were breaking with some versions of R (hex color strings weren't always being generated with 6 full characters) (#30426). Jonathan
Updated GenArk build scripts to use new version of RepeatMasker (#29545). Hiram
Added a doRepeatModeler.pl script to run RepeatModeler on a GenArk build. Hiram
Began a script faToHub.sh to make a GenArk hub from a single fasta file and nothing else. Starts the build of the hub, but there is no documentation as there is no meta data for the assembly. Hiram
Continuous GenArk updates and liftOver files generation. (#29545). Hiram