v444

Code changes:

• Added two new right click options when clicking on a genePred track, zoom to codon and zoom to exon (#2724). Chris
• Added query strand and position as color and mouseover to BLAT results tracks (both bigPsl custom track and special BLAT output track), (#30578). Max
• Added a "track snapshot" button to hgTracks. Under hg.conf control (#30024). Chris
• added "download file" links directly to the table browser "schema / data format" button for bigDataUrl tracks (#30491). Max
• We no longer provide links to EPS versions of the hgTracks and hgGenome images. This is in preparation for creating non-compliant EPS files to facilitate transparency effects in Browser images and PDF output (#30606). Jonathan
• Redraw barChart svgs on the client so the column widths can be wide enough for labels (#28439). Chris
• Prevent faceted barChart configuration when doing right-click config (#30102). Chris
• hubApi "track" argument can now be a comma sep list to return data from multiple tracks at once (#30024). Chris
• Fixed bug in logo display that caused a crash if it was the child of a composite (#30626). Brian
• Added a note in TB helping users who do not know the full wiggle data format (#30585). Max
• tableBrowser trackDb setting now works correctly in the hubApi (#30024). Chris
• Fixed hgc crash on new hgGene link when protocol is not https (#30545). Max
• Work with the asmEquivalent hgFixed table to get an assembly name for the GDV browser. Hiram
• Fixed a bug in the calculation of knownCanonical that let some totally weird transcripts slip in. Brian
• Ongoing work to optionally show snakes in chain and psl display (#30280). Brian
• Made track duplication to be on by default without hg.conf variable (#30586). Brian
• gff3ToGenePred updated to handle Ensembl feature types. Mark
• Fixed minor problems found with newer gcc compiler on Ubuntu 20, compiled on a vm. Galt
• Disabled parallel loading in hgCustom on hic and bigMaf tracks which are not thread safe (#26445). Brian
• Added support for clould URLS for mirrors. A URL resolver plugin functionality allows an external program to convert cloud URLs (s3:, gs: drs:) to http/https URLs (#30445). Mark
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• knownGeneV43 on hg38 and knownGeneVM32 on mm39. Brian
• GENCODE Versions V43, V43lift37, and VM32 for hg38, hg19, and mm39. Mark
• Continuous GenArk updates and liftOver files generation. (#29545). Hiram
• Improvements to wuhCor1 big tree build process. Angie