v448

Code changes:

• The API 'list' function is now available and documented (#23589). Hiram
• Continued work on squishy-pack display (#30225). Brian
• Fixed html problems with hgHubConnect where the alignment of columns to headers was wrong. Also improved the alignment of the search details section (#31250). Galt
• Fixed search bugs: encode hub track names with non [a-z] names, allow psuedo HGVS searches that resolve to a rough position (while eliciting a warn) to still resolve, don't show unencoded search strings when a search fails (#30257). Chris
• Minor changes to wording of duplicate track feature to now say "duplicate #N" instead of "copy #N" (#30911). Max
• Fixed bug where hub URLs were getting truncated (#31293). Brian
• bigMaf is now supported for sequence logos, also added logoMaf to bigWig tag types in support of adding the setting to all popular hg* and mm* conservation tracks. Brian
• Longer descriptions now allowed in autoSql column names, separated by a pipe character. (Crossing fingers that no one has pipe characters already in their labels). Max
• pslMap now trims overlapping blocks that can happen when mapping protein to DNA alignments from BLAT translated alignments. Mark
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• Highly reproducible regions track for hg38 (#31122). Chris
• The CCGP - California Conservation Genomics Project assembly hub is now available at as a hub and on GenArk: https://hgdownload.soe.ucsc.edu/hubs/CCGP/ (#30508). Hiram
• Updated the VGP assembly hub bringing it up to date: https://hgdownload.soe.ucsc.edu/hubs/VGP/ (#29545). Hiram
• Improvements to wuhCor1 big tree build process. Angie.
• Continuous GenArk updates and liftOver files generation. (#29545). Hiram