v458

Code changes:

• Custom track parsing: don't remove custom track files when there is an error (#32627). Angie
• Add the ability to simulate a custom track load error using ctTest=1 on the URL (#32705). Brian
• Additional tooltip improvements: make the tooltips go away when mouse leaves the web browser window or enters an input box or right-click. Improved the tooltip Y position to go lower or higher depending on where the mouse enters from. Made the font size of the tooltips be a configurable option (#32688). Chris
• Added right-click option to enter exon position for genePred tracks (#32684). Chris
• Made enter key submit forms in dialog boxes (#32684). Chris
• Made ref seq historical track open when HGVS term hit an outdated transcript (#32639). Chris
• Finally added a few lines explaining what exonFrames is to our genePred doc (#32675). Max
• Hide children of superTracks when loading RTSs (#32556). Brian
• YPs (chrM genes) got dropped from Refseq curated track, changing doNcbiRefSeq to put them back (#32667). Max
• Added utility (fixTrackDb) to update trackDb to what files are actually on the system (#32741). Brian
• Fixed problem in tdbQuery with overrides not being addressed properly, this came up with the RefSeq composite edits by Lou. Brian
• Fixed problem in hgNear building bad links into hgGene on the description field (#32720). Brian
• hgTables: sped up bigBed identifier search by using name index so it doesn't time out on huge files like dbSnp155 (#32625). Angie
• Improved the ability to restore symlinked files back into their wrangle or submit directories so they are not lost in cdwReallyRemoveDataset. Galt
• Added -tsv option to bigBedToBed to create a TSV-style header that can be used with tools that work with TSVs, such as python CVS/TSV reader and Pandas. Mark
• Optionally replacing links to Youtube with links to videos hosted on our website using SSI (#32535). Max
• Various GBiB fixes (#32693). Max
• Better adherence to W3C html coding standards in static html pages. Hiram
• hgPhyloPlace: improvements for RSV, better config support for new species, support for reference not from db or hub. Angie
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• Ongoing work on various HPRC tracks. Hiram, Max, Brian
• Continuous GenArk updates and liftOver file generation. (#29545). Hiram
• Improvements to wuhCor1 big tree build process. Angie.