v460

Code changes:

• Save the last 5 searched terms into the autocomplete dropdown (#29611). Chris
• Big based tracks now go straight into density coverage instead of lowering visibility on item overflow or exceeding height (#32854). Brian
• Fixed mouseover event not re-raising after the mouseover timer completes (#32697). Chris
• Fixed bug with tracks not updating when zooming out (#32749). Brian
• Added a note to longLabel if a VCF track is in coverage mode (#32864). Max
• Added hg.conf variable to trust trackDb and not check for data presence at startup (#32910). Brian
• Exons now show the phase of the first and last codon on mouseover (#32487). Max
• Added a menu entry "find short exact DNA match" to the "genome browser" menu (#32893). Max
• Added a new button "highlight" and a menu entry to the UI, the same as the "h+m" keyboard shortcut (#32892). Max
• The hgBlat "sequence too short" error message now points to our help docs, Hiram's findMotifs tools, and oligoMatch track (#32487). Max
• Summary modes now used in bigBeds for coverage mode (#32854). Brian
• Decoupled item limits for bigBeds from item limits in the display (#32920). Brian
• Limit VCF fetch to 10,000 items instead of unlimited (#32920). Brian
• Make the tutorial warning go away if it has been viewed more than 5 times without being explicitly closed (#32861). Chris
• When submitting the track search form, don't send an empty hubUrl setting as it confuses the cart code (#32909). Chris
• Fixed up seg fault when doing mrna singlePos searching (#32890). Chris
• Fixed bug where csv output on Table Browser header was still tsv (#32884). Chris
• If you add '&verbose=x' to any URL, the CGI will now output the verbose() messages. This means that you can see what UDC is doing. Does not stay in the cart. Feedback by engineers is appreciated. Max
• Added an alpha option to the clinvar otto track, so I can change the otto track with less risk of breaking the real otto job. This creates a "ClinVar ALPHA" track, so on hgwdev we now have two Clinvar tracks. Max
• Added more defenses against bots targeting poor hgGeneGraph: a captcha that asks users questions about genomics and higher bottleneck penalties. Max
• Ongoing GBIC work, new linux distributions came out, partially based on Jorge's feedback, as he used GBIC for the new genome-asia. Max
• Modified gff3ToGenePred to try hard to find meaningful names for records that don't have a Name attribute. Mark

Data changes:

• Clinvar track now has HTML mouseovers, with spiffy bolded text (#32915). Max
• Improved GenArk build system to better handle large genomes over 4Gb in size (#29545). Hiram
• Added T2T primate assemblies to GenArk. Hiram
• Added European mistletoe assembly to GenArk, large assembly over 90 Gb. Hiram
• Continuous GenArk updates and liftOver file generation. (#29545). Hiram
• Improvements to wuhCor1 big tree build process. Angie.