v461

Code changes:

• Fixed exon numbering mouseovers in squish mode. Brian
• Auto-resize hgTracks if user comes in not from hgGateway (#32925). Max
• Added a way to limit RAM used by the browser (#32956). Brian
• Hub subtrack shortlabels now show up in the "table" dropdown of the table browser (#33013). Chris
• Mouseover speed optimization: wait for the actual element to be moused over before creating all the related mouseover node elements (#32997). Chris
• Committed the initial version of the "hubMake" tool that generates a hub.txt for files in a directory. Track settings can be adjusted via .ra (manual), .json (good for scripts) or .tab files (good for bulk changes with awk and cut). Places files into subdirectories to create composite tracks (#31059). Max
• Added logging of high water mark of RAM usage (#32956). Brian
• Work on quickLift with an idea for exported hubs. Brian
• Hash the INFO fields during vcf header parsing so the data parsing afterwards is faster. Chris
• Added a "-fieldsIsFile" flag to vcfToBed to read INFO fields to keep from a file instead of the command line. Chris
• Removed hundreds of lines of cruft from common.mk. Max
• More GBIC changes for Rocky 9 and RHEL based on commercial users' feedback. Max
• Added a "developer mode" to GBIC: You run "browserSetup.sh dev" on a fresh linux server and you get vim and the kent tree installed and can edit and use "make alpha" to update your local mirror. Max
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• Updated chrM RefSeq annotations on hg38, hg19, and mm39. Hiram
• New HTML mouseovers in clinvar track (hgTracks' HTML is getting bigger and bigger...)(#32915). Max
• Improvements to wuhCor1 big tree build process. Angie.
• Continuous GenArk updates and liftOver file generation. (#29545). Hiram