- v462 Preview 1 - 26 February 2024
- v462 Preview 2 - 4 March 2024
- v462 Final - 11 March 2024
Code changes:
- bigBed coverage graphs now always include zero. Brian
- Track hubs: added a "more info" link to their description.txt in their group blue bar on the right (#33065). Max
- Increased maxItemsPossible to 100,000 in response to user MLQ. Brian
- Fixed CRAM custom tracks on hs1. Brian
- Otto jobs: fixed a bug in uniprot, some updates were missed because md5 was only run on part of the records. Max
- Fixed the GWAS catalog otto job that was having a MySQL issue. Brian
- Updated kent source build rules for Mac OSX on x86_64 and arm64 machine architectures to work with Sonoma OS version. Hiram
- Added bigChainToChain to userApps download build. Hiram
- Added an option to bamToPsl command to supply query sizes file to get consistent psl output records all with the correct query size specified. Hiram
- Mirrors: added some (guessed/copied) RedHat support for GBIC (we don't have a license for RedHat at UCSC). Max
- spToDb should now better handle the current UniProt flat file format (#30476). Jonathan
- Continuous GenArk process improvements (#29545). Hiram
Data changes:
- GENCODE VM34 knownGene (mm39) build (#32415). Jonathan
- GENCODE V45 knownGeneV45 (hg38) build (#32414). Jonathan
- gnomAD v4 constraint on hg38 (#33084). Chris
- gnomAD v2.1.1 non-cancer filter on hg19/hg38 (#32916). Chris
- Improvements to wuhCor1 big tree build process. Angie.
- Continuous GenArk updates and liftOver file generation. (#29545). Hiram