v465

Code changes:

• Allow hubs to declare their own track groups (#33039). Brian
• Added a new bigBed trackDb setting for highlighting items, specified the same way as trackDb filters (#24507). Chris
• Added a filter on filterBy (dropdown filters) to hgTrackUi (#20460). Max
• Genark hubs can be selected by using db=GC* in trackDb (#335580. Brian
• Added 'in new tab' link to hgBlat output page and an info icon to the "make custom track" BLAT button (#19668). Max
• Allow n. notation in HGVS parser (#25982). Max
• Get Genark genomes into hgGateway species auto-complete search (#33572). Chris
• Chevrons are no longer drawn in squish mode even if intronGap is set (#33480). Brian
• Fixed hgGateway autocomplete to not show nulls for assembly hub hits (#33572). Chris
• Made drag selects not open hgc pages (#33584). Chris
• Changed exon mouseover after user feedback (#33506). Max
• Tweaked category names when searching for assemblies on hgGateway (#33572). Max
• Skip super long CIGARs on hgc page so the page doesn't crash anymore on long reads (#33292). Max
• Strip off hub_#_ when sending Genark hub data to Galaxy. Brian
• Added an option to bigWigAverageOverBed to output TSV headers. Mark
• Allow a mirror-specific piece of javascript added through hg.conf, no redmine, can be used for the China mirror. Max
• hgPhyloPlace: Selected pathogen can now be a group of references and trees, e.g. just "Dengue" for all four types. Angie
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• New knownGene track for hg19 after more than a decade (#32302). Brian
• Changed labeling of HPRC rearrangement track. Brian
• Reorganize chain track composite trackDb entries on GenArk assemblies. Hiram
• Added liftOver chain alignment tracks to all primates and mammal GenArk genomes Hiram
• Improvements to wuhCor1 big tree build process. Angie.
• Continuous GenArk updates and liftOver file generation (#29545). Hiram