v469

Code changes:

• Added a configure page option for controlling whether hgc clicks open in pop-ups or not (#3321). Chris
• Made knownGene handle like regular tracks by hgSearch, moved HGNC and MANE search results ahead of knownGene in priority (#33774). Chris
• Changed some styling of hgSearch search results (#33503). Chris
• Hi-C tracks now have support for version 9 of the hic file format (the current latest). Basic support for other normalization modes is also included, but we recommend you add any normalization to all resolutions in the file instead of only selected ones (#33225). Jonathan
• Standardized the font size of our dialog windows (rec. track sets, multi-region, etc)(#27236). Max
• Changed chroms to chromAuthority names in hgBlat and hgPcr (#27505).
• Track heights now capped at 31,000px (#34127).
• Print BLAT version on hgPcr form since ask for it (#34047). Max
• Made priority optional in groups.txt. for the hub groups feature. Also actually sort by priority if specified (#34067).
• Fixed defaultIsClosed flag on the hub groups feature and changed it to sort groups by name without regard to case (# 34067).
• Fixed double call to vfprintf in defaultWarn (#34135). Chris
• Added -tsv option to pslMap to output TSVs for mapInfo files rather than autoSql tab format. Mark
• Fixed shortcut for bigWigs not being positional. This was causing a problem on track hubs (#34132).
• hgGene will now skip over trying to generate an RNA structure PDF if the corresponding postscript file is missing. To generate postscript files, visit the hgGene details page for that gene (#34156). Jonathan
• hgSession will now only load sessions from URLs that are actually URLs, and no longer reports the content of bad settings (it was a security flaw) (#34223). Jonathan
• Rewrote commonNames.pl into commonNames.py to avoid /cluster/home/ NFS overload (#33720). Hiram
• Working up new data table assemblyList for use in gateway page assembly search and replacement to the fixed html text of the current assembly request page (#33720). Hiram
• Experimenting with placing the GenArk hub files directly in /gbdb/genark/ to avoid the potentially slow or external single point of failure hgdownload server (#33526). Hiram
• Continuous GenArk process improvements (#29545). Hiram

Data changes:

• chainNet tracks for hs1 (#34149). Hiram
• Improvements to wuhCor1 big tree build process. Angie.
• Continuous GenArk updates and liftOver file generation (#29545). Hiram