v478

Code changes:

• Added sort option to bedToBigBed utility (#29104). Brian
• Added a cart rewrite for the new Splicing Impact supertrack (#34823). Brian
• Explain how to download big* files on the Table Browser schema page (#35223). Max
• Added support for quickLifting mySQL beds, including custom tracks. Brian
• Added ability to turn off table name based handling in CGIs per track will default to type based handling. Brian
• Do not create a hub on invocation of hgCollection. This should reduce number of empty hubs (#35088). Brian
• Fixed another prop() vs attr() jquery upgrade bug, this time when turning on subtracks (#34750). Chris
• Fixed minor hgTracks imageV2 bug - add one only if we are drawing center labels (#31541). Galt
• hgConvert will now report when it's unable to find a chain file instead of crashing (this is very rare) (#35271). Jonathan
• GBiB will now update from a frozen binary set until we make it compatible with our new compilation setup (#35183). Jonathan
• sqlTableSize return value switched from int to long type to support tables with more than 2^31 rows (#35262). Jonathan
• Removed sandbox commands from our mariadb table dumps for better compatibility with older mariadb and mysql installations. Jonathan
• Proof of concept preview of contributed tracks to GenArk hubs working out of /gbdb/ hierarchy (#34917). Hiram
• Working toward getting GenArk hubs to function out of the /gbdb/ local filesystem (#34706). Hiram
• Fixed file path security concern in hgEncodeVocab (#287). Galt
• Improvements to wuhCor1 big tree build process. Angie.

Data changes:

• PubTator track now includes not only SNPs from rsIDs extracted from text, but also other variants discovered by the tmVar2 software from NCBI and grounded to dbSNP IDs. Johannes
• Adjusted default track visibilities on GenArk hubs (#35201). Hiram
• Continuous GenArk updates and liftOver file generation (#29545). Hiram