- v484 Preview 1 - 16 June 2025
- v484 Preview 2 - 23 June 2025
- v484 Final - 30 June 2025
Code changes:
- Added support for a new track type: bedMethyl. This format is optimized for displaying methylation information coming from PacBio and Nanopore (#33504). Brian
- Show locus name on BLAT results table (#35993). Max
- Simplified the tooltip code to fix lingering tooltip bugs: using a mouseenter and mouseleave event on each item, combined with a timer, instead of the old mouseover + document.mousemove system and multiple timers (#34462). Chris
- Require users to have a valid cookie before using hgGeneGraph (#35391). Max
- TLC for the PDF page, removed EPS text and replaced with a note about vector graphics (#29394). Max
- hubspace: The pre-create hook sets the upload path that the rest of the hooks and tusd itself use, so we don't have to move files around anymore. Chris
- Fixed right-click option jump to exon/codon to work on bigGenePreds (#35799). Chris
- Removed duplicated link on hgc page on bigGenePred (#35895). Max
- Table browser now shows a "too big" warning when gnomAD tracks are selected (#35899). Max
- Fixed bug when clearing filters on hgTrackUi to reset the actual select (#35906). Chris
- Fixed clade option not working in hgCustom (#35863). Hiram
- Output BAM alignment type in hgc page. Mark
- Fixed multi-region issue with hideEmptySubtracks to correctly use counts of all windows, not just the first (#35472). Galt
- Allow alternative namedSessionDb tables when a session was not found, one step towards "universal sessions" (#35992). Max
- When our JavaScript code queues cart events and creates a URL, don't double-encode values that are already encoded (#35799). Chris
- XSS prevention in error message output for errAbort() (#34157). Max
- Allowing a pipe character rather than the dot in MAF files. Max
- libcurl has been added to the list of dynamic dependencies for our tools, including our otherwise statically-compiled binaries (#35988). Jonathan
- Clinvar otto improvements: added ClinVar lollies to the archive, added a validation to the ClinVar sub lollies script (#35750). Max
- Allow userAgents to circumvent CAPTCHA, defined in hg.conf.private (#35938). Max
- Fixed parasol packet overflow issue in paraNode resurrect (#34883). Galt
- Fixed parasol so paraNodeStart passes the name in cluster.ms to pass to paraNode as explicit hostname, and make resurrect and checkJob work correctly (#34883). Galt
- Improvements to wuhCor1 big tree build process. Angie.
Data changes:
- M-CAP track for hg38 (#35922). Max
- MutScore track for hg19 and hg37 (#35806). Max
- Continuous GenArk updates and liftOver file generation (#29545). Hiram