v490

Code changes:

• Added an info icon to the group blue bar of track hubs on hgTracks (#36610). Max
• Added support to the position search box for gnomad style range specifiers, e.g. 1-1234-A-C (#36388). Chris
• Clear cart variables related to a hub when you disconnect the hub (#36536). Brian
• Added a dash to the allowed chars list (#19482, #30010). Galt
• Allow mafGene to take in an input file instead of just a database table (#36583). Brian
• Users will no longer be nagged about filter* settings being reported as invalid in hubCheck (#28113). Galt
• Added cart rewrite 9 for moving ddg2p track out of decipher and into its own track, and move encodeCcreCombined into a super track (#36529). Chris
• Fixed a filtering UI bug where we printed br tags that mess up the JavaScript that builds the dropdownchecklist (#36484). Chris
• Evaluation of Longdust, FasTAN, and RED as compared to the current masking procedure. Hiram
• When API keys are sent, open an hgcentral connection and close it right afterwards, to make sure that no sleeping CGIs clog mysql connections (#36498). Max
• Added bedToBigBed -fixScores to correct scores that are out-of-range or invalid integer values (#36530. Mark
• hubCheck can now scan for and report with text valid values for VIEWLIMIT VIEWLIMITMAX and DEFAULTVIEWLIMIT (#12098). Galt
• Added hg.conf var to dump all CGI variables (POST and GET) with short value strings to the apache log (#36533). Max
• Verify the returnto argument when doing logins, and add an hg.conf variable of approved returnto hosts (#36485). Chris
• More RedHat RHEL-specific fixes to GBiC installer. Max
• Made hgMenubar not error out when invoked alone (#36580). Max

Data changes:

• New Variant Frequencies superTrack with variant frequencies, adding Mexico City, Million Exomes, and various other projects to it (#36628). Max
• gnomAD MPC for hg19 (#36531). Max
• Ancient DNA with Neanderthal and Denisovan variants on hg38 (#36592). Max
• Track updates for the Varaico track, as well as small fixes to the PubTator (#36612). Johannes
• Continuous GenArk updates and liftOver file generation (#29545). Hiram