- v491 Preview 1 - 10 November 2025
- v491 Preview 2 - 17 November 2025
- v491 Final - 24 November 2025
Code changes:
- Single path for loading bigBeds, and auto-recognizing the bigBed type based on the header (#19984). Brian
- Initial import and rework of a new faceted UI for composite tracks, intended for situations where there are too many tracks for the existing composite UI to be usable. The feature was graciously contributed by Andrew Smith at USC (#36320).
- Added a checkbox that turns on rearrangement mode automatically for all CTs generated by hgBlat (#32857). Galt
- Fixed another jquery-upgrade-induced bug on the composite track UI page (#36743). Max
- Fixed a problem quickLifting between human assemblies (#36702). Brian
- Fixed link to hs1 browser from hub management page listing track hub (#36540). Hiram
- hConnectCentralNoCache can now access remote central servers (#36320). Jonathan
- The right-click menu in hgTracks was listing all visibility options for tracks with an onlyVisibility setting (which is supposed to limit options). It has been made aware of the setting (#36746). Jonathan
- Fixed maf frames caching bug (#36691). Brian
- Fixed search bug on assembly hubs with supertracks caused by spurious calls to hubCollectTracks (#36640). Chris
- Made listExisting endpoint to hubApi/liftOver respect fromGenome and toGenome arguments, taking precedence over the filter argument. If both fromGenome and toGenome arguments are present, they are ANDed together. Chris
- Explicitly send cookies when doing async cart requests. Chris
- Added option to twoBitMask to allow a bigBed file for masking (#36672). Hiram
- Fixed mafAddIrows and mafSplit to recognize GenArk GCx... assemblies in MAF files where the problem was the assembly name has dots in the name, and MAF files delineate assembly name and sequence name with a dot (#34370). Hiram
Data changes:
- Continuous GenArk updates and liftOver file generation (#29545). Hiram