v492

Code changes:

• Save HGVS searches onto the search history stack (#35984). Chris
• HGVS searches use the refSeqSelect table if the transcript is present (#36201). Chris
• Do HGVS searches in the auto-suggest position box on hgTracks (#35984). Chris
• Fixed hgTrackUi to properly show filters for bigBeds with less than five fields (#36910). Brian
• In bigBed click handling, changed error to warning when trackDb type field count differs from the bigBed header (#36911). Brian
• Removed the info link for quickLift groups in hgTracks (#36662). Brian
• Fixed gene alleles section of hgGene when doing hgGene in the popup on hgTracks (#36770). Chris
• Fixed hgTracks tooltips to store the tooltip information in the 'data-tooltip' attribute instead of in the 'title' attribute to preserve the title strings. wait until DOMContentLoaded to actually parse the titles into 'data-tooltip' so the text size variable is present (#35756). Chris
• Fixed default hidden sections in hgGene to properly open when clicked, and fixed the population button in the Common Gene Haplotype Alleles section (#36770). Brian
• Fixed PDF output problem in hgTracks. Previously, we had set hgFindMatches = NULL for PDF output to suppress the item search highlight in the generated PDF. But track loading code in bigBedTrack and squishPackyMode both depend on that search term, those routines that need the original search value (#36738). Galt
• Added hgTables Summary and intersection buttons for knownCanonical (#36524). Galt
• Fixed missing field descriptions for mm39 knownGene (#32209). Galt
• Fixed Table Browser to allow bigGenePred to be used like genePred and provide CDS FASTA output (#34712). Galt
• Fixed hgTables Sequence output with CDS casing bug that caused introns to be upper case and has existed since 2002 (#34381). Galt
• Fixed hgLiftOver min match filter with -multiple fixed. It has been allowing too-small regions in the output. Error was in the system since 2013 (#17501). Galt
• Beginning to import the TOGA V2 annotations. Added a 'hideToggle' class element to hgc description page to allow hide/show of text on the description page for a track item. Function is on the TOGA V2 details page (#35776). Hiram

Data changes:

• Continuous GenArk updates and liftOver file generation (#29545). Hiram