src/hg/makeDb/doc/hg18.txt 1.347

Index: src/hg/makeDb/doc/hg18.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/hg18.txt,v
retrieving revision 1.346
retrieving revision 1.347
diff -b -B -U 4 -r1.346 -r1.347
--- src/hg/makeDb/doc/hg18.txt	20 Feb 2009 23:22:04 -0000	1.346
+++ src/hg/makeDb/doc/hg18.txt	21 Feb 2009 00:55:16 -0000	1.347
@@ -26568,9 +26568,9 @@
     ln -s `pwd`/$gp.$mz.exonAA.fa.gz $pd/$gp.exonAA.fa.gz
     ln -s `pwd`/$gp.$mz.exonNuc.fa.gz $pd/$gp.exonNuc.fa.gz
 
 #########################################################################
-# BUILD OMIM RELATED GENES TRACK (Done 12/4/08 Fan)
+# BUILD OMIM RELATED GENES TRACK (done 12/4/08, rebuilt 2/20/09 Fan)
 
 ssh hgwdev
 cd /hive/data/genomes/gs.19/build36/bed
 mkdir omimGene
@@ -26638,9 +26638,9 @@
 
 # finally sort the table and create bed 4 file and load it as the omimGene table
 
 hgsql hg18 -N -e 'select chrom, txStart, txEnd, name from fanO4 order by
-chrom, txStart, txEnd' >omimGene.bed
+chrom, txStart, txEnd' |sort -u >omimGene.bed
 hgLoadBed hg18 omimGene omimGene.bed
 
 # create and load the omimToKnownCanonical table.
 
@@ -26663,9 +26663,10 @@
     hgsql hg18 -e 'update omimGene set name="611016" where name="608636"'
 
 # add additional entries that related to "NR_...." RefSeqs
 
-hgGetNrOmimGene hg18 j.tmp |sort -u j.tmp > omimGeneNR.bed
+hgGetNrOmimGene hg18 j.tmp 
+sort -u j.tmp > omimGeneNR.bed
 
 cat omimGene.bed omimGeneNR.bed |sort -u >omimGeneAll.bed
 hgLoadBed hg18 omimGene omimGeneAll.bed