src/hg/makeDb/doc/rn4.txt 1.32

1.32 2009/02/10 20:27:54 hiram
Ran liftOver to rn5 back in December
Index: src/hg/makeDb/doc/rn4.txt
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/doc/rn4.txt,v
retrieving revision 1.31
retrieving revision 1.32
diff -b -B -U 4 -r1.31 -r1.32
--- src/hg/makeDb/doc/rn4.txt	30 Jan 2009 00:09:27 -0000	1.31
+++ src/hg/makeDb/doc/rn4.txt	10 Feb 2009 20:27:54 -0000	1.32
@@ -4922,4 +4922,13 @@
     cat fb.mm9.chainRn4LastzLink.txt 
     #	1713323126 bases of 2620346127 (65.385%) in intersection
 
 #############################################################################
+# LIFTOVER TO Rn5 (DONE - 2008-12-14 - Hiram )
+    mkdir /hive/data/genomes/rn4/bed/blat.rn5.2008-12-14
+    cd /hive/data/genomes/rn4/bed/blat.rn5.2008-12-14
+    # -debug run to create run dir, preview scripts...
+    doSameSpeciesLiftOver.pl -debug rn4 rn5
+    # Real run:
+    time nice -n +19 doSameSpeciesLiftOver.pl rn4 rn5 > do.log 2>&1
+
+#############################################################################