src/hg/encode/DAFs/WoldRnaSeq.ex.ddf 1.3
1.3 2009/02/14 08:11:52 mikep
version of D?F that was successfully loaded
Index: src/hg/encode/DAFs/WoldRnaSeq.ex.ddf
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/DAFs/WoldRnaSeq.ex.ddf,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/hg/encode/DAFs/WoldRnaSeq.ex.ddf 9 Dec 2008 16:20:06 -0000 1.2
+++ src/hg/encode/DAFs/WoldRnaSeq.ex.ddf 14 Feb 2009 08:11:52 -0000 1.3
@@ -1,17 +1,33 @@
-file view cell rnaExtract localization mapAlgorithm replicate labVersion
-GM12878rnaseqr1.graph RawSignal GM12878 longPolyA cell erange3.0beta 1
-GM12878rnaseqr2.graph RawSignal GM12878 longPolyA cell erange3.0beta 2
-GM_2x75_blat.all.bed Alignments GM12878 longPolyA cell blat34
-GM_2x75_blat.graph Signal GM12878 longPolyA cell blat34
-GM_2x75_blat.splices.bed Alignments GM12878 longPolyA cell blat34
-GM_2x75_bowtie.all.bed Alignments GM12878 longPolyA cell bowtie0.98
-GM_2x75_bowtie.graph Signal GM12878 longPolyA cell bowtie0.98
-GM_2x75_bowtie.splices.bed Alignments GM12878 longPolyA cell bowtie0.98
-K562_2x75_blat.graph Signal K562 longPolyA cell blat34
-K562_2x75_blat.all.bed Alignments K562 longPolyA cell blat34
-K562_2x75_blat.splices.bed Alignments K562 longPolyA cell blat34
-K562_2x75_bowtie.all.bed Alignments K562 longPolyA cell bowtie0.98
-K562_2x75_bowtie.graph Signal K562 longPolyA cell bowtie0.98
-K562_2x75_bowtie.splices.bed Alignments K562 longPolyA cell bowtie0.98
-K562rnaseqr1.graph RawSignal K562 longPolyA cell erange3.0beta 1
-K562rnaseqr2.graph RawSignal K562 longPolyA cell erange3.0beta 2
+files view cell rnaExtract localization mapAlgorithm replicate labVersion
+ENCODERNA/GM12878rnaseqr1.all.bed Alignments GM12878 longPolyA cell bow098 1 erange3.0beta
+ENCODERNA/GM12878rnaseqr2.all.bed Alignments GM12878 longPolyA cell bow098 2 erange3.0beta
+ENCODERNA/K562rnaseqr1.all.bed Alignments K562 longPolyA cell bow098 1 erange3.0beta
+ENCODERNA/K562rnaseqr2.all.bed Alignments K562 longPolyA cell bow098 2 erange3.0beta
+ENCODERNA/GM12878rnaseqr1.splices.bed Splices GM12878 longPolyA cell bow098 1 erange3.0beta/bowtie0.981
+ENCODERNA/GM12878rnaseqr2.splices.bed Splices GM12878 longPolyA cell bow098 2 erange3.0beta/bowtie0.981
+ENCODERNA/K562rnaseqr1.splices.bed Splices K562 longPolyA cell bow098 1 erange3.0beta/bowtie0.981
+ENCODERNA/K562rnaseqr2.splices.bed Splices K562 longPolyA cell bow098 2 erange3.0beta/bowtie0.981
+ENCODERNA/GM12878rnaseqr1.graph RawSignal GM12878 longPolyA cell erng3b 1 erange3.0beta
+ENCODERNA/GM12878rnaseqr2.graph RawSignal GM12878 longPolyA cell erng3b 2 erange3.0beta
+ENCODERNA/K562rnaseqr1.graph RawSignal K562 longPolyA cell erng3b 1 erange3.0beta
+ENCODERNA/K562rnaseqr2.graph RawSignal K562 longPolyA cell erng3b 2 erange3.0beta
+ENCODERNA/GM12878rnaseqr1.final.rpkm RawData2 GM12878 longPolyA cell erng3b 1 erange3.0beta
+ENCODERNA/GM12878rnaseqr2.final.rpkm RawData2 GM12878 longPolyA cell erng3b 2 erange3.0beta
+ENCODERNA/K562rnaseqr1.final.rpkm RawData2 K562 longPolyA cell erng3b 1 erange3.0beta
+ENCODERNA/K562rnaseqr2.final.rpkm RawData2 K562 longPolyA cell erng3b 2 erange3.0beta
+ENCODERNA/GM12878_2x75.all.bed PairedAligns GM12878 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/K562_2x75.all.bed PairedAligns K562 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/GM12878_2x75.allsplices.bed Splices GM12878 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/GM12878_2x75.blatsplices.bed Splices GM12878 longPolyA cell blat34 1 erange3.0/blat34
+ENCODERNA/K562_2x75.allsplices.bed Splices K562 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/K562_2x75.blatsplices.bed Splices K562 longPolyA cell blat34 1 erange3.0/blat34
+ENCODERNA/GM12878_2x75.graph RawSignal GM12878 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/K562_2x75.graph RawSignal K562 longPolyA cell bowblt1 1 erange3.0/bowtie0.981/blat34
+ENCODERNA/pairedreads/GMr1lane?_?.unmapped.fa.gz RawData GM12878 longPolyA cell bow098 1 bowtie0.981
+ENCODERNA/pairedreads/K562r1lane?_?.unmapped.fa.gz RawData K562 longPolyA cell bow098 1 bowtie0.981
+ENCODERNA/pairedreads/GMr1lane?_?.query75.txt.gz RawData GM12878 longPolyA cell NA 1
+ENCODERNA/pairedreads/K562r1lane?_?.query75.txt.gz RawData K562 longPolyA cell NA 1
+ENCODERNA/pairedreads/GMr1lane?_?.hg18sp75spike.bowtie.txt.gz RawData3 GM12878 longPolyA cell bow098 1 bowtie0.981
+ENCODERNA/pairedreads/K562r1lane?_?.hg18sp75spike.bowtie.txt.gz RawData3 K562 longPolyA cell bow098 1 bowtie0.981
+ENCODERNA/pairedreads/GMr1lane?_?.bowtierej.hg18.blatbetter.gz RawData4 GM12878 longPolyA cell bowblt1 1 bowtie0.981/blat34
+ENCODERNA/pairedreads/K562r1lane?_?.bowtierej.hg18.blatbetter.gz RawData4 K562 longPolyA cell bowblt1 1 bowtie0.981/blat34