Index: src/hg/utils/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/makefile,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 1000000 -r1.11 -r1.12
--- src/hg/utils/makefile	18 Jul 2008 04:37:03 -0000	1.11
+++ src/hg/utils/makefile	10 Feb 2009 22:27:09 -0000	1.12
@@ -1,65 +1,67 @@
 # Build all directories in utils
 # test comment
 # 	$Id$
 
 include ../../inc/common.mk
 
 all:    
 	@for D in $(USE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done
 
 scripts:
 	@for F in ${SCRIPT_FILES}; do \
 	    chmod +x $$F; \
 	    rm -f ${SCRIPTS}/$${F}; \
 	    echo cp -p $$F ${SCRIPTS}; \
 	    cp -p $$F ${SCRIPTS}; \
 	 done
 	cd automation && ${MAKE} scripts
 
 alpha: scripts all
 
 test:
 	@echo "nothing for tests yet"
 
 clean:
 	@for D in $(USE_DIRS) x; do \
 	  if test "$$D" != "x" ; then \
 	    ( cd $$D && echo $$D && $(MAKE) clean ) ;\
 	    x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
 	    fi ;\
 	done
 	touch non-empty-rm.o
 	- find . -name \*.o -print | xargs rm
 
 SCRIPT_FILES = \
 	dumpDb.pl \
 	mergeOverlapBed4.pl
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
 	bedWeedOverlapping \
 	chromGraphFromBin \
 	chromGraphToBin \
+	crTreeIndexBed \
+	crTreeSearchBed \
 	gapToLift \
 	oligoMatch \
 	safePush \
 	toDev64 \
 	twoBitMask
 
 BAD_DIRS= \
 	ccCpLock \
 	geneStarts \
 	jimgrep \
 	jkShell \
 	dnsInfo \
 	wigAsciiToBinary \
 	positionalTblCheck \
 	cCp
 

