src/utils/wigToBigWig/wigToBigWig.c 1.6
1.6 2009/02/10 08:18:18 kent
Shortened 'clipDontDie' option to just 'clip'
Index: src/utils/wigToBigWig/wigToBigWig.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/wigToBigWig/wigToBigWig.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/utils/wigToBigWig/wigToBigWig.c 9 Feb 2009 02:53:36 -0000 1.5
+++ src/utils/wigToBigWig/wigToBigWig.c 10 Feb 2009 08:18:18 -0000 1.6
@@ -26,18 +26,18 @@
"and out.bw is the output indexed big wig file.\n"
"options:\n"
" -blockSize=N - Number of items to bundle in r-tree. Default %d\n"
" -itemsPerSlot=N - Number of data points bundled at lowest level. Default %d\n"
- " -clipDontDie - If set just issue warning messages rather than dying if wig\n"
+ " -clip - If set just issue warning messages rather than dying if wig\n"
" file contains items off end of chromosome."
, blockSize, itemsPerSlot
);
}
static struct optionSpec options[] = {
{"blockSize", OPTION_INT},
{"itemsPerSlot", OPTION_INT},
- {"clipDontDie", OPTION_BOOLEAN},
+ {"clip", OPTION_BOOLEAN},
{NULL, 0},
};
void wigToBigWig(char *inName, char *chromSizes, char *outName)
@@ -52,9 +52,9 @@
{
optionInit(&argc, argv, options);
blockSize = optionInt("blockSize", blockSize);
itemsPerSlot = optionInt("itemsPerSlot", itemsPerSlot);
-clipDontDie = optionExists("clipDontDie");
+clipDontDie = optionExists("clip");
if (argc != 4)
usage();
wigToBigWig(argv[1], argv[2], argv[3]);
return 0;