src/hg/encode/encodeLoad/doEncodeLoad.pl 1.57

Index: src/hg/encode/encodeLoad/doEncodeLoad.pl
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/encode/encodeLoad/doEncodeLoad.pl,v
retrieving revision 1.56
retrieving revision 1.57
diff -b -B -U 4 -r1.56 -r1.57
--- src/hg/encode/encodeLoad/doEncodeLoad.pl	13 Feb 2009 23:36:19 -0000	1.56
+++ src/hg/encode/encodeLoad/doEncodeLoad.pl	7 Mar 2009 07:22:06 -0000	1.57
@@ -163,9 +163,9 @@
     my ($assembly, $tableName, $fileList, $pushQ) = @_;
     HgAutomate::verbose(2, "loadBed ($assembly, $tableName, $fileList, $pushQ)\n");
     if(!$opt_skipLoad) {
         my $catCmd = makeCatCmd("loadBed", $fileList);
-        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed $assembly $tableName stdin -tmpDir=$tempDir");
+        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed -noNameIx $assembly $tableName stdin -tmpDir=$tempDir");
         HgAutomate::verbose(2, "loadBed cmds [".join(" ; ",@cmds)."]\n");
         my $safe = SafePipe->new(CMDS => \@cmds, STDOUT => "/dev/null", DEBUG => $opt_debug);
         if(my $err = $safe->exec()) {
             die("ERROR: File(s) '$fileList' failed bed load:\n" . $safe->stderr() . "\n");
@@ -181,9 +181,9 @@
     my ($assembly, $tableName, $fileList, $pushQ) = @_;
     HgAutomate::verbose(2, "loadBedGraph ($assembly, $tableName, $fileList, $pushQ)\n");
     if(!$opt_skipLoad) {
         my $catCmd = makeCatCmd("loadBedGraph", $fileList);
-        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed $assembly $tableName -bedGraph=4 stdin -tmpDir=$tempDir");
+        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed -noNameIx $assembly $tableName -bedGraph=4 stdin -tmpDir=$tempDir");
         HgAutomate::verbose(2, "loadBedGraph cmds [".join(" ; ",@cmds)."]\n");
         my $safe = SafePipe->new(CMDS => \@cmds, STDOUT => "/dev/null", DEBUG => $opt_debug);
         if(my $err = $safe->exec()) {
             die("ERROR: File(s) '$fileList' failed bedGraph load:\n" . $safe->stderr() . "\n");
@@ -212,9 +212,9 @@
 	    # change minScore for Stam Lab
 	    $fillInArg .= "-minScore=500 " if $tableName =~ /^wgEncodeUwDnaseSeq/;
         }
         my $catCmd = makeCatCmd("loadBedFromSchema", $fileList);
-        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed $assembly $tableName stdin -tmpDir=$tempDir -sqlTable=$Encode::sqlCreate/${sqlTable}.sql -renameSqlTable $fillInArg");
+        my @cmds = ($catCmd, "egrep -v '^track|browser'", "/cluster/bin/x86_64/hgLoadBed -noNameIx $assembly $tableName stdin -tmpDir=$tempDir -sqlTable=$Encode::sqlCreate/${sqlTable}.sql -renameSqlTable $fillInArg");
         HgAutomate::verbose(2, "loadBedFromSchema cmds [".join(" ; ",@cmds)."]\n");
         my $safe = SafePipe->new(CMDS => \@cmds, STDOUT => "/dev/null", DEBUG => $opt_verbose > 2);
 
         if(my $err = $safe->exec()) {