src/hg/snp/snpLoad/makefile 1.46

1.46 2009/03/06 23:37:57 angie
Adding hapmapPhaseIIISummary, which distills hapmapSnps* and hapmapAlleles* columns into a loading file for the hapmapPhaseIIISummary table, which is used to filter hapmapSnps subtracks in hgTracks.

Index: src/hg/snp/snpLoad/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/snp/snpLoad/makefile,v
retrieving revision 1.45
retrieving revision 1.46
diff -b -B -U 4 -r1.45 -r1.46
--- src/hg/snp/snpLoad/makefile	1 Aug 2008 23:13:31 -0000	1.45
+++ src/hg/snp/snpLoad/makefile	6 Mar 2009 23:37:57 -0000	1.46
@@ -3,12 +3,19 @@
 L = ${MYSQLLIBS} -lm
 MYLIBDIR = ../../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
-A = snpNcbiToUcsc
-${A}: ${A}.o ${MYLIBS}
-	${CC} ${COPT} -o ${BINDIR}/${A} ${A}.o ${MYLIBS} $L
-	${STRIP} ${BINDIR}/${A}${EXE}
+all: snpNcbiToUcsc hapmapPhaseIIISummary
+
+S = snpNcbiToUcsc
+${S}: ${S}.o ${MYLIBS}
+	${CC} ${COPT} -o ${BINDIR}/${S} ${S}.o ${MYLIBS} $L
+	${STRIP} ${BINDIR}/${S}${EXE}
+
+H = hapmapPhaseIIISummary
+${H}: ${H}.o ${MYLIBS}
+	${CC} ${COPT} -o ${BINDIR}/${H} ${H}.o ${MYLIBS} $L
+	${STRIP} ${BINDIR}/${H}${EXE}
 
 O = affyLookup.o cnpLookup.o fetchSeq.o \
     hapmap1.o hapmap2.o hapmapLookup.o hapmapMixed.o \
     hapmapOrtho.o hapmapSummary.o hapmapValidate.o \
@@ -28,9 +35,9 @@
     snpReadFasta.o snpReadSeq.o snpReadSeq2.o snpRefUCSC.o \
     snpSort.o snpSplitByChrom.o snpSplitByChrom2.o snpSNP.o \
     subSnpCondense.o trimHeader.o
 
-all: affyLookup cnpLookup fetchSeq \
+old: affyLookup cnpLookup fetchSeq \
      hapmap1 hapmap2 hapmapLookup hapmapMixed \
      hapmapOrtho hapmapSummary hapmapValidate \
      illuminaLookup \
      illuminaLookup2 \