src/hg/altSplice/affySplice/makefile 1.12

1.12 2009/03/10 00:33:40 galt
Modifications to make system to support optional external libraries, motivated by need for SSL

Index: src/hg/altSplice/affySplice/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/altSplice/affySplice/makefile,v
retrieving revision 1.11
retrieving revision 1.12
diff -b -B -U 1000000 -r1.11 -r1.12
--- src/hg/altSplice/affySplice/makefile	19 Dec 2006 23:34:56 -0000	1.11
+++ src/hg/altSplice/affySplice/makefile	10 Mar 2009 00:33:40 -0000	1.12
@@ -1,23 +1,23 @@
 
 include ../../../inc/common.mk
 
-L = $(MYSQLLIBS) -lm 
+L += $(MYSQLLIBS) -lm 
 MYLIBDIR = ../../../lib/$(MACHTYPE)
 MYLIBS =  ../lib/$(MACHTYPE)/libSpliceGraph.a  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a 
 GNUSL = /cluster/home/sugnet/local
 
 % : %.c
 	$(CC) $(COPT) -I../inc -I../../inc  -I../../../inc -I$(GNUSL)/include -L$(GNUSL)/lib -o $@ $(addsuffix .c,$@) $(MYLIBS) $(MYSQLLIBS) $(GNUSL)/lib/libgsl.a $(GNUSL)/lib/libgslcblas.a -lm -lz 
 	cp $@ ${BINDIR}
 
 O =  altHtmlPages bedOverlap gcPresAbs junctionSets agxStartsEnds \
      bedsSpliceCheck probeMatcher seqForExonProbes mergeAffyProbes \
       merge1lqAndCels makeRFiles rnaBindingClusterCorr calcSpliceDistance  \
      altProbes eseScorer spliceProbeVis dataMatrixToSql dataMatrixToSoft
 
 exe: $(O)
 
 test: $(TESTS)
 
 lib:
 	cd ../../lib && ${MAKE}