src/hg/altSplice/exonWalk/makefile 1.9

Index: src/hg/altSplice/exonWalk/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/altSplice/exonWalk/makefile,v
retrieving revision 1.8
retrieving revision 1.9
diff -b -B -U 1000000 -r1.8 -r1.9
--- src/hg/altSplice/exonWalk/makefile	19 Jan 2007 20:15:14 -0000	1.8
+++ src/hg/altSplice/exonWalk/makefile	10 Mar 2009 00:33:41 -0000	1.9
@@ -1,37 +1,37 @@
 include ../../../inc/common.mk
 #OPT= -O2
 #OPT = -O3 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -Wuninitialized
 OPT= -ggdb 
-L = $(MYSQLLIBS) -lm 
+L += $(MYSQLLIBS) -lm 
 MYLIBDIR = ../../../lib/$(MACHTYPE)
 MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a ../lib/$(MACHTYPE)/libSpliceGraph.a 
 
 % : %.c
 	${CC} ${COPT} ${CFLAGS} $(OPT) -Wformat -Wimplicit -I../inc -I../../inc  -I../../../inc  -o $@ $(addsuffix .c,$@) $(MYLIBS) $(MYSQLLIBS) -lm
 	cp $@ ${BINDIR}
 
 %Test: %Test.c 
 	${CC} ${COPT} ${CFLAGS} -Wimplicit  -I../inc -I../../inc -I../../../inc  -o $@ $(addsuffix .c,$@) $(MYLIBS) $(L)
 
 O =  exonWalk borfMatcher
 
 TESTO = 
 
 TESTS = 
 
 exe: $(O)
 
 clean: 
 	rm -f $(O)
 
 track:
 	#./exonWalk ranbp1.agx exonWalk.bed -diagnostics -trim
 	time ./exonWalk /cluster/home/sugnet/store1/altSplice/hg10.chr22.rnaCluster.2.tab exonWalk.bed -diagnostics  >& exonWalk.log
 	cat cleanEsts.bed  exonSites.bed rejects.bed exonWalk.bed whites.bed > out.bed
 	chmod 777 out.bed
 	cp out.bed $(HOME)/.html/
 
 test: $(TESTS)
 
 lib:
 	cd ../../lib && ${MAKE}