src/hg/lib/encode/broadPeak.as 1.3

Index: src/hg/lib/encode/broadPeak.as
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/encode/broadPeak.as,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/hg/lib/encode/broadPeak.as	24 Oct 2008 19:18:10 -0000	1.2
+++ src/hg/lib/encode/broadPeak.as	6 Mar 2009 17:40:30 -0000	1.3
@@ -1,13 +1,13 @@
 table broadPeak
 "peaks of signal enrichment based on pooled, normalized (interpreted) data. It is a BED6+3 format"
 (
     string chrom;        "Name of the chromosome"
     uint   chromStart;   "Start position in chromosome"
     uint   chromEnd;     "End position in chromosome"
     string name;	 "Optional. Name given to a region (preferably unique). Use . if no name is assigned."
     uint   score;        "Optional. Indicates how dark the peak will be displayed in the browser (1-1000). If '0', the DCC will assign this based on signal value. Ideally average signalValue per base spread between 100-1000."
     char[2]   strand;       "Optional. +/- to denote strand or orientation (whenever applicable). Use '.' if no orientation is assigned."
     float  signalValue;  "Measurement of average enrichment for the region"
-    float  pValue;       "Within dataset statistical significance of signal value (-log10)"
-    float  qValue;       "Cross-dataset statistical significance of signal value (-log10)"
+    float  pValue;       "Statistical significance of signal value (-log10). Set to -1 if not used."
+    float  qValue;       "Statistical significance with multiple-test correction applied (FDR). Set to -1 if not used."
 )