src/hg/lib/encode/encodePeak.as 1.4
1.4 2009/03/06 04:19:33 kate
Update comments
Index: src/hg/lib/encode/encodePeak.as
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/encode/encodePeak.as,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/lib/encode/encodePeak.as 14 Nov 2008 16:00:12 -0000 1.3
+++ src/hg/lib/encode/encodePeak.as 6 Mar 2009 04:19:33 -0000 1.4
@@ -1,17 +1,17 @@
table encodePeak
"Peaks format (BED 6+)"
(
string chrom; "Reference sequence chromosome or scaffold"
uint chromStart; "Start position in chromosome"
uint chromEnd; "End position in chromosome"
string name; "The name... probably just a period"
uint score; "Score 1-1000"
char[2] strand; "+, -, or ."
float signalValue; "Measurement of average enrichment for the region"
- float pValue; "Statistical significance of signal value (-log10)"
- float qValue; "Statistical significance normalized/corrected across datasets. Use -1 if no qValue is assigned."
+ float pValue; "Statistical significance of signal value (-log10). Use -1 if not assigned"
+ float qValue; "Statistical significance across datasets. Use -1 if no qValue is assigned."
int peak; "Point-source called for this peak; 0-based offset from chromStart (use -1 if no point-source called)"
uint blockCount; "Number of blocks"
uint[blockCount] blockSizes; "Comma separated list of block sizes"
uint[blockCount] blockStarts; "Start positions relative to chromStart"
)