src/hg/makeDb/hgLoadMaf/makefile 1.11

Index: src/hg/makeDb/hgLoadMaf/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/makeDb/hgLoadMaf/makefile,v
retrieving revision 1.10
retrieving revision 1.11
diff -b -B -U 1000000 -r1.10 -r1.11
--- src/hg/makeDb/hgLoadMaf/makefile	31 May 2008 15:39:32 -0000	1.10
+++ src/hg/makeDb/hgLoadMaf/makefile	10 Mar 2009 00:34:05 -0000	1.11
@@ -1,77 +1,77 @@
 include ../../../inc/common.mk
 
-L = -lm ${MYSQLLIBS}
+L += -lm ${MYSQLLIBS}
 MYLIBDIR = ../../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 AO = hgLoadMaf.o
 A = hgLoadMaf
 BO = hgLoadMafSummary.o
 B = hgLoadMafSummary
 
 both:	hgLoadMaf hgLoadMafSummary
 
 hgLoadMafSummary: ${BO} ${MYLIBS}
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/${B} ${BO} ${MYLIBS} $L
 	${STRIP} ${BINDIR}/hgLoadMafSummary${EXE}
 
 hgLoadMaf: ${AO} ${MYLIBS}
 	${CC} ${COPT} ${CFLAGS} -o ${BINDIR}/${A} ${AO} ${MYLIBS} $L
 	${STRIP} ${BINDIR}/hgLoadMaf${EXE}
 
 compile:	${AO} ${BO} ${MYLIBS}
 	${CC} ${COPT} ${CFLAGS} -o ${A} ${AO} ${MYLIBS} $L
 	${CC} ${COPT} ${CFLAGS} -o ${B} ${BO} ${MYLIBS} $L
 
 cgi:: compile
 	chmod a+rx $A${EXE}
 	@if [ ! -d "${CGI_BIN}-${USER}/loader" ]; then \
 		${MKDIR} ${CGI_BIN}-${USER}/loader; \
 	fi
 	rm -f ${CGI_BIN}-${USER}/loader/$A
 	mv $A${EXE} ${CGI_BIN}-${USER}/loader/$A
 
 alpha:: strip
 	@if [ ! -d "${CGI_BIN}/loader" ]; then \
 		${MKDIR} ${CGI_BIN}/loader; \
 	fi
 	rm -f ${CGI_BIN}/loader/$A
 	mv $A${EXE} ${CGI_BIN}/loader/$A
 
 beta:: strip
 	@if [ ! -d "${CGI_BIN}-beta/loader" ]; then \
 		${MKDIR} ${CGI_BIN}-beta/loader; \
 	fi
 	rm -f ${CGI_BIN}-beta/loader/$A
 	mv $A${EXE} ${CGI_BIN}-beta/loader/$A
 
 strip::  compile
 	${STRIP} $A${EXE}
 	chmod g+w $A${EXE}
 	chmod a+rx $A${EXE}
 	${STRIP} $B${EXE}
 	chmod g+w $B${EXE}
 	chmod a+rx $B${EXE}
 
 install::  strip
 	@if [ ! -d "${DESTDIR}${CGI_BIN}/loader" ]; then \
 		${MKDIR} "${DESTDIR}${CGI_BIN}/loader"; \
 	fi
 	rm -f ${DESTDIR}${CGI_BIN}/loader/$A
 	mv $A${EXE} ${DESTDIR}${CGI_BIN}/loader/$A
 
 debug:: $O
 	${CC} ${AO} ${MYLIBS} ${L}
 	mv ${AOUT} $A${EXE}
 	${CC} ${BO} ${MYLIBS} ${L}
 	mv ${AOUT} $B${EXE}
 
 clean::
 	rm -f ${AO} ${BO} $A${EXE} $B${EXE} tests/bed.tab
 
 test:
 	cd tests && ./RunTest.sh
 
 test_verbose:
 	cd tests && ./RunTest.sh -verbose