src/hg/mouseStuff/chainInfo/makefile 1.11
1.11 2009/03/10 00:34:15 galt
Modifications to make system to support optional external libraries, motivated by need for SSL
Index: src/hg/mouseStuff/chainInfo/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/mouseStuff/chainInfo/makefile,v
retrieving revision 1.10
retrieving revision 1.11
diff -b -B -U 1000000 -r1.10 -r1.11
--- src/hg/mouseStuff/chainInfo/makefile 19 Dec 2006 23:35:15 -0000 1.10
+++ src/hg/mouseStuff/chainInfo/makefile 10 Mar 2009 00:34:15 -0000 1.11
@@ -1,17 +1,17 @@
include ../../../inc/common.mk
-L = -lm $(MYSQLLIBS)
+L += -lm $(MYSQLLIBS)
MYLIBDIR = ../../../lib/$(MACHTYPE)
MYLIBS = $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
O = chainInfo.o
chainInfo: $O $(MYLIBS)
${CC} ${COPT} ${CFLAGS} -O -o ${BINDIR}/chainInfo $O $(MYLIBS) $L
# ${STRIP} ${BINDIR}/chainInfo${EXE}
test: 22 7
%: input/chr%.chain
chainInfo mm3 chr$@ input/chr$@.chain /cluster/store5/gs.16/build33//bed/blastz.mm3.2003-04-12-03-MS/axtSyn/chr$@.bed /cluster/store5/gs.16/build33//chrom.sizes /cluster/store2/mm.2003.02/mm3/chrom.sizes /cluster/store5/gs.16/build33/$@/chr$@.fa.out /scratch/mm3/rmsk/ output/chr$@.out /cluster/store2/mm.2003.02/mm3/bed/refSeq/refGene.tab /cluster/store2/mm.2003.02/mm3/bed/softberry/genePred.tab /cluster/store5/gs.16/build33//bed/bedOver/vega/new.gp /cluster/store2/mm.2003.02/mm3/bed/mrna/mrna.tab
diff expected/chr$@.out output/chr$@.out
rm output/chr$@.out