kate: changes by file

review to branch (2009-03-03 to 2009-03-10) v202

• src/hg/hgc/encodeClick.c
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Correct misleading label
• src/hg/hgc/hgc.c
  • 1.1513 lines changed: 12, context: html, text, full: html, text
    Add ENCODE data restriction timestamp
• src/hg/lib/hui.c
  • 1.168 lines changed: 4, context: html, text, full: html, text
    Switch ENCODE downloads link to appropriate downloads server. Also, Add link to multi-view help.
  • 1.165 lines changed: 3, context: html, text, full: html, text
    Label was confusing in this context
• src/hg/lib/encode/broadPeak.as
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Correct comments for encode Peaks schemas
• src/hg/lib/encode/encodePeak.as
  • 1.5 lines changed: 2, context: html, text, full: html, text
    Correct comments for encode Peaks schemas
  • 1.4 lines changed: 2, context: html, text, full: html, text
    Update comments
• src/hg/lib/encode/gappedPeak.as
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Correct comments for encode Peaks schemas
• src/hg/lib/encode/narrowPeak.as
  • 1.3 lines changed: 2, context: html, text, full: html, text
    Correct comments for encode Peaks schemas
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.189 lines changed: 692, context: html, text, full: html, text
    Fix up many long labels
  • 1.188 lines changed: 198, context: html, text, full: html, text
    All tracks now have short labels pruned to 16
  • 1.186 lines changed: 1, context: html, text, full: html, text
    Missed setting color this one
  • 1.185 lines changed: 232, context: html, text, full: html, text
    Fix syntax error in colors
  • 1.184 lines changed: 390, context: html, text, full: html, text
    Color cells for all tracks by tissue type (Novartis conventions)
  • 1.183 lines changed: 138, context: html, text, full: html, text
    Color cell types following Novartis GNF tissue coloring conventions
  • 1.181 lines changed: 1, context: html, text, full: html, text
    Tweak on sort order
  • 1.180 lines changed: 3, context: html, text, full: html, text
    Minor changes for usability. Fix errant minScore
  • 1.179 lines changed: 75, context: html, text, full: html, text
    Remove Tiers from cell types. Turn off more tracks by default on Yale
  • 1.178 lines changed: 2, context: html, text, full: html, text
    Changes for consistency
  • 1.175 lines changed: 226, context: html, text, full: html, text
    Edit long labels for consistency. Prune Yale long labels for length
  • 1.174 lines changed: 64, context: html, text, full: html, text
    Prune Yale shortlabels for length and consistency
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
  • 1.30 lines changed: 2, context: html, text, full: html, text
    Change downloads section
  • 1.22 lines changed: 11, context: html, text, full: html, text
    1. Add link for qValue explanation. 2. Condense redundant info
  • 1.21 lines changed: 24, context: html, text, full: html, text
    Add reference to cell culture protocols. Expand and clean up methods
  • 1.17 lines changed: 1, context: html, text, full: html, text
    Expand based on feedback
  • 1.15 lines changed: 19, context: html, text, full: html, text
    Added ENCODE views verbiage, and specifics for Yale