pchan: changes by commit

review to branch (2009-03-03 to 2009-03-10) v202

• change aero to archdev, lowedev to collab, and isla to test; add functions to load swissprot db and pfam desc
  • src/hg/archaeStuff/scripts/archaeBrowser/Constant.pm 1.27 - lines changed: 28, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/GenomeInfo.pm 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/OrganismDb.pm 1.28 - lines changed: 10, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/archaeBrowser/ProteinDb.pm 1.1 - lines changed: 131, context: html, text, full: html, text
  • src/hg/archaeStuff/scripts/make-browser-2.0 1.35 - lines changed: 9, context: html, text, full: html, text
• update StringDb link in track
  • src/hg/makeDb/trackDb/lowelab/aerPer1/description.html 1.11 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/aerPer1/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/archFulg1/description.html 1.8 - lines changed: 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/archFulg1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/caldMaqu1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/cenaSymb1/description.html 1.3 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/cenaSymb1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/desuKamc1/trackDb.ra 1.3 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/ferrAcid1/description.html 1.10 - lines changed: 96, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/ferrAcid1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/halMar1/description.html 1.13 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/halMar1/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloHalo1/description.html 1.9 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloHalo1/trackDb.ra 1.16 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloSali1/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloVolc1/description.html 1.5 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/haloWals1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/hypeButy1/description.html 1.5 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/hypeButy1/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/igniHosp1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/koraCryp1/trackDb.ra 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/mculMari1/description.html 1.5 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/mculMari1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/metAce1/description.html 1.7 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/metAce1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/metMar1/description.html 1.9 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/metMar1/trackDb.ra 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/metaSedu/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methAeol1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methBark1/description.html 1.9 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methBark1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methBoon1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methBurt2/description.html 1.4 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methBurt2/trackDb.ra 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methHung1/description.html 1.5 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methHung1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methJann1/description.html 1.11 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methJann1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methKand1/description.html 1.10 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methKand1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methLabrZ_1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMari_C5_1/description.html 1.5 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMari_C5_1/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMari_C6/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMari_C7/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMaze1/description.html 1.7 - lines changed: 40, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methMaze1/trackDb.ra 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methSmit1/description.html 1.3 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methSmit1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methStad1/description.html 1.6 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methStad1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methTher1/description.html 1.9 - lines changed: 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methTher1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methTherPT1/description.html 1.4 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methTherPT1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/methVann1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/nanEqu1/description.html 1.7 - lines changed: 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/nanEqu1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/natrPhar1/description.html 1.8 - lines changed: 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/natrPhar1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/nitrMari1/trackDb.ra 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/picrTorr1/description.html 1.10 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/picrTorr1/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrAby1/description.html 1.15 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrAby1/trackDb.ra 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrAer1/description.html 1.11 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrAer1/trackDb.ra 1.50 - lines changed: 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrFur2/description.html 1.11 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrFur2/trackDb.ra 1.30 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrHor1/description.html 1.10 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyrHor1/trackDb.ra 1.19 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroArse1/description.html 1.5 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroArse1/trackDb.ra 1.22 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroCali1/description.html 1.4 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroCali1/trackDb.ra 1.24 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroIsla1/description.html 1.4 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/pyroIsla1/trackDb.ra 1.25 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/stapMari1/description.html 1.5 - lines changed: 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/stapMari1/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulSol1/description.html 1.10 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulSol1/trackDb.ra 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulfAcid1/description.html 1.10 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulfAcid1/trackDb.ra 1.14 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulfToko1/description.html 1.8 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/sulfToko1/trackDb.ra 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therAcid1/description.html 1.11 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therAcid1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therKoda1/description.html 1.12 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therKoda1/trackDb.ra 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therNeut1/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therOnnu1/trackDb.ra 1.3 - lines changed: 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therPend1/description.html 1.5 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therPend1/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therTena1/description.html 1.2 - lines changed: 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therVolc1/description.html 1.8 - lines changed: 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/therVolc1/trackDb.ra 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/uncuMeth_RCI/trackDb.ra 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrChol1/description.html 1.5 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrChol_MO10_1/description.html 1.4 - lines changed: 254, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrChol_O395_1/description.html 1.4 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrFisc_ES114_1/description.html 1.4 - lines changed: 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrPara1/description.html 1.4 - lines changed: 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrVuln_CMCP6_1/description.html 1.4 - lines changed: 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/lowelab/vibrVuln_YJ016_1/description.html 1.4 - lines changed: 32, context: html, text, full: html, text
• update StringDb link to use TaxID instead of species name
  • src/hg/archaeStuff/scripts/archaeBrowser/GenePrediction.pm 1.6 - lines changed: 4, context: html, text, full: html, text