tdreszer: changes by file

branch to review (2009-02-24 to 2009-03-03) v201

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.78 lines changed: 1, context: html, text, full: html, text
    Changed SREBP1 to SREBP1A as per Mike Willson's request
  • 1.77 lines changed: 32, context: html, text, full: html, text
    Added GATA-1, JunD, SREBP1 and SREBP2 antibodies
  • 1.75 lines changed: 8, context: html, text, full: html, text
    Added TCF4 for Snyder's lab
• src/hg/hgTracks/encode.c
  • 1.18 lines changed: 34, context: html, text, full: html, text
    Changed encodePeak support for individual filters: qValue, pValue, signalValue and score
• src/hg/inc/hui.h
  • 1.119 lines changed: 19, context: html, text, full: html, text
    Added dyAddFilterAsInt and dyAddFilterAsDouble for encodePeak support
• src/hg/js/hui.js
  • 1.20 lines changed: 39, context: html, text, full: html, text
    Fixed some less efficient jQuery calls.
• src/hg/lib/hui.c
  • 1.162 lines changed: 18, context: html, text, full: html, text
    Support for Min Gray level in multi-view and for min but not max score filter.
  • 1.160 lines changed: 181, context: html, text, full: html, text
    Changed encodePeak support for individual filters: qValue, pValue, signalValue and score
  • 1.159 lines changed: 86, context: html, text, full: html, text
    Change contolled vocab link to use trackDb setting, Also change to support javascript multi-view droip downs
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • 1.50 lines changed: 1, context: html, text, full: html, text
    Too many soring messages.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.172 lines changed: 684, context: html, text, full: html, text
    Added Feb freeze tracks for Duke and Yale
  • 1.171 lines changed: 14, context: html, text, full: html, text
    Replaced filterPvalQval with pValueFilter=0.0,qValueFilter=0.0 making filters individually supportable
  • 1.166 lines changed: 295, context: html, text, full: html, text
    More regeneration of Duke/UNC/UTA peaks and signals
  • 1.165 lines changed: 498, context: html, text, full: html, text
    Added for Yale, updated Chromatin, change to controlledVocab setting
• src/lib/cheapcgi.c
  • 1.110 lines changed: 2, context: html, text, full: html, text
    class needed quotations.