src/hg/protein/kgBestRef2/kgPrepBestRef2.c 1.6
1.6 2009/03/17 19:54:57 markd
minor speed up of rendering of mRNA/ESTs by checking gbSeq table before seq table, avoiding two sql requests. Also simplified code.
Index: src/hg/protein/kgBestRef2/kgPrepBestRef2.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/protein/kgBestRef2/kgPrepBestRef2.c,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 4 -r1.5 -r1.6
--- src/hg/protein/kgBestRef2/kgPrepBestRef2.c 3 Sep 2008 19:20:56 -0000 1.5
+++ src/hg/protein/kgBestRef2/kgPrepBestRef2.c 17 Mar 2009 19:54:57 -0000 1.6
@@ -5,10 +5,8 @@
#include "common.h"
#include "hCommon.h"
#include "hdb.h"
-extern int hRnaSeqAndIdx(char *acc, struct dnaSeq **retSeq, HGID *retId, char *gbdate, struct sqlConnection *conn);
-
char proteinName[20], mrnaName[20];
char mrnaNames[500][20];
int mrnaScore[500];
char proteinNameOld[20] = {""};
@@ -184,9 +182,9 @@
printf("%s\t%s\n", proteinID, mrnaID);fflush(stdout);
sprintf(cond_str, "name='%s'", mrnaID);
- if (hRnaSeqAndIdx(mrnaID, &mSeq, &id, mrnaDate, conn3)== -1)
+ if (hRnaSeqAndIdx(mrnaID, &mSeq, &id, conn3)== -1)
{
printf("%s could not be found!!!\n", mrnaID);fflush(stdout);
}
else