src/hg/instinct/bioInt2/bioGeneLevel.c 1.2

Index: src/hg/instinct/bioInt2/bioGeneLevel.c
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/instinct/bioInt2/bioGeneLevel.c,v
retrieving revision 1.1
retrieving revision 1.2
diff -b -B -U 1000000 -r1.1 -r1.2
--- src/hg/instinct/bioInt2/bioGeneLevel.c	20 Mar 2009 06:06:31 -0000	1.1
+++ src/hg/instinct/bioInt2/bioGeneLevel.c	22 Mar 2009 01:07:28 -0000	1.2
@@ -1,77 +1,44 @@
 /* mapProbesToGenes - Will maps probes in BED format to overlapping gene(s). */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "jksql.h"
 #include "hPrint.h"
 #include "hdb.h"  
 #include "dystring.h"
 #include "bioIntDb.h"
 #include "bioIntDriver.h"
 #include "cprob.h"
 #include "hgStatsLib.h"
 #include "bioController.h"
 
 
 struct analysisResult *metaGene(struct biAnalysis *ba, struct slPair *spList, 
 				char *sample, char *gene)
 {
 struct slPair *sp;
 struct slDouble *sd, *sdList = NULL;
 for (sp = spList; sp; sp = sp->next)
     {
     struct slDouble *vals = sp->val;
     if (!vals)
 	continue;
     double val = slDoubleMedian(vals);
     sd = slDoubleNew(val);
     slAddHead(&sdList, sd);
     }
 
 float chi2, metaP;
 if (!fishersMetaSigned(sdList, &chi2, &metaP))
     return NULL;
 
 slFreeList(&sdList);
 struct analysisResult *ar;
 AllocVar(ar);
 ar->sample  = cloneString(sample);
 ar->feature = cloneString(gene);
 ar->val     = metaP;
 ar->conf    = chi2;
 return ar;
 }
-
-
-struct biAnalysis *registerGeneLevelAnalyses(char *db, struct slName *datasets)
-{
-struct biAnalysis *ba, *baList = NULL;
-
-struct slName *sl;
-struct dyString *dy = newDyString(10);
-for (sl = datasets; sl; sl = sl->next)
-    {
-    dyStringPrintf(dy, "%s", sl->name);
-    if (sl->next)
-	dyStringPrintf(dy, "_");
-    }
-char *prefix = dyStringCannibalize(&dy);
-
-/* Set up Meta-Gene analysis */
-AllocVar(ba);
-ba->db = cloneString(db);
-char tableName[256];
-safef(tableName, sizeof(tableName), "%s_meta", prefix);
-
-ba->tableName = cloneString(tableName);
-ba->parameters = hashNew(0);
-ba->analyze = metaGene;
-
-slAddHead(&baList, ba);
-
-/* Setup future analysis here... */
-
-return baList;
-}  
-