src/utils/qa/compareTrackDbs.csh 1.25

Index: src/utils/qa/compareTrackDbs.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/compareTrackDbs.csh,v
retrieving revision 1.24
retrieving revision 1.25
diff -b -B -U 1000000 -r1.24 -r1.25
--- src/utils/qa/compareTrackDbs.csh	21 Feb 2007 19:21:09 -0000	1.24
+++ src/utils/qa/compareTrackDbs.csh	21 Mar 2009 00:29:24 -0000	1.25
@@ -1,104 +1,104 @@
 #!/bin/tcsh
 
 set table = "trackDb"
 set field = "tableName"
 set cent=""
 set host=""
 
 if ($#argv < 3 || $#argv > 4) then
  echo ""
  echo "  compares trackDb on two machines."
  echo "  optionally compares another field instead of tableName."
  echo
  echo "    usage: machine1 machine2 database [field] (defaults to tableName)"
  echo ""
  exit 1
 endif
 
 set machine1 = $argv[1]
 set machine2 = $argv[2]
 set db = $argv[3]
 
 #set machine1 = "hgwdev"
 #set machine1 = "hgwbeta"
 #set machine2 = "hgw1"
 
 if ( $#argv == 4 ) then
   # check if valid field -- checks on localhost (usually hgwdev)
   set field = $argv[4]
   hgsql -t -e "DESC $table" $db | grep -w $field | wc -l > /dev/null
   if ( $status ) then
     echo
     echo "  $field is not a valid field for $table"
     echo
     exit 1
   endif
 endif
 
 # check validity of machine name and existence of db on the machine.
 foreach machine ( $machine1 $machine2 )
   checkMachineName.csh $machine
   if ( $status ) then
     echo ${0}:
     $0
     exit 1
   endif
   if ( $machine == "hgwdev" ) then
     set cent="test"
     set host=""
   else
     if ( $machine == "hgwbeta" ) then
       set cent="beta"
-      set host="-h hgwbeta"
+      set host="-h hgofbeta"
     else
       set cent=""
       set host="-h genome-centdb"
     endif
   endif
 
   hgsql -N $host -e "SELECT name FROM dbDb" hgcentral$cent \
      | grep -w "$db" >& /dev/null
   if ( $status ) then
     echo
     echo "  database $db is not found in dbDb on $machine"
     echo
     exit 1
   endif
 end
 
 foreach mach ( $machine1 $machine2 )
   rm -f $mach.$db.$table 
   getField.csh $db trackDb $field $mach > $mach.$db.out
 end
 
 # defensive logic to avoid "sort" disrupting blob tracks
 set sort=""
 if ($field != "html" && $field != "settings") then
   set sort="1"
   sort $machine1.$db.out > $machine1.$db.out$sort 
   sort $machine2.$db.out > $machine2.$db.out$sort 
 endif
 
 # DO NOT CHANGE this output, unless you want to change all of the following, too:
 # compareTrackDbFast.csh
 # compareTrackDbAll.csh
 # trackDbGlobal.csh
 
 echo
 echo "---------------------------------------------------------------"
 echo 
 # if the line begins with a digit, substitute a newline at the beginning
 # | perl -pw -e "s/^(\d)/\nx/"
 diff $machine1.$db.out$sort $machine2.$db.out$sort | sed -e "/^[0123456789]/s/^/\n/" >& $db.temp
 if ( $status ) then
   echo "\n$db.$table.$field : Differences exist between $machine1 and $machine2 \n"
   cat $db.temp
   echo
 else
   echo "\n$db.$table.$field : No differences between $machine1 and $machine2 \n"
 endif
 
 # clean up
 rm -f $machine1.$db.out*
 rm -f $machine2.$db.out*
 rm -f $db.temp