src/hg/hgTracks/hgTracks.h 1.182
1.182 2009/03/19 22:21:05 angie
Refactoring for performance issue raised by David: moved all baseColor work that was done at load-time to draw-time, and removed the freeing-by-default of original genePred and psl structs converted to lf. Now, when there are so many items in the window that limitVisibility kicks it down to dense mode, we don't waste time on baseColor stuff that won't be used. Also some refactoring for tidiness in cds.c: got rid of a couple unused function args.
Index: src/hg/hgTracks/hgTracks.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/hgTracks/hgTracks.h,v
retrieving revision 1.181
retrieving revision 1.182
diff -b -B -U 4 -r1.181 -r1.182
--- src/hg/hgTracks/hgTracks.h 9 Feb 2009 19:11:53 -0000 1.181
+++ src/hg/hgTracks/hgTracks.h 19 Mar 2009 22:21:05 -0000 1.182
@@ -752,16 +752,18 @@
struct linkedFeatures *lfFromPslx(struct psl *psl,
int sizeMul, boolean isXeno, boolean nameGetsPos, struct track *tg);
/* Create a linked feature item from pslx. Pass in sizeMul=1 for DNA,
- * sizeMul=3 for protein. */
+ * sizeMul=3 for protein.
+ * Don't free psl afterwards! (may be used by baseColor code) */
struct simpleFeature *sfFromPslX(struct psl *psl,int grayIx, int
sizeMul);
struct linkedFeatures *lfFromPsl(struct psl *psl, boolean isXeno);
-/* Create a linked feature item from psl. */
+/* Create a linked feature item from psl.
+ * Don't free psl afterwards! (may be used by baseColor code) */
struct linkedFeatures *lfFromPslsWScoresInRange(char *table, int start, int end, char *chromName, boolean isXeno, float maxScore);
/* Return linked features from range of table with the scores scaled appropriately */