jsanborn: changes by commit

review to branch (2009-03-17 to 2009-03-31) v203

• added signed fishers
  • src/hg/instinct/inc/hgStatsLib.h 1.5 - lines changed: 3, context: html, text, full: html, text
  • src/hg/instinct/lib/hgStatsLib.c 1.12 - lines changed: 35, context: html, text, full: html, text
• initial commit
  • src/hg/instinct/bioInt2/bioController.c 1.1 - lines changed: 425, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.1 - lines changed: 34, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioGeneLevel.c 1.1 - lines changed: 77, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.as 1.1 - lines changed: 135, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.1 - lines changed: 2828, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.1 - lines changed: 1248, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.1 - lines changed: 156, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.c 1.1 - lines changed: 1706, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.1 - lines changed: 152, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntegrator.c 1.1 - lines changed: 413, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioMeta.c 1.1 - lines changed: 572, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.1 - lines changed: 36, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.1 - lines changed: 1274, context: html, text, full: html, text
• added routine to set cohorts
  • src/hg/instinct/bioInt2/bioController.c 1.2 - lines changed: 64, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.as 1.2 - lines changed: 33, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.2 - lines changed: 684, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.2 - lines changed: 309, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.2 - lines changed: 38, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.2 - lines changed: 8, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/setCohorts.c 1.1 - lines changed: 280, context: html, text, full: html, text
• moved stuff around
  • src/hg/instinct/bioInt2/bioController.c 1.3 - lines changed: 412, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.1 - lines changed: 430, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.2 - lines changed: 1, context: html, text, full: html, text
• updated code and added UI stubs
  • src/hg/instinct/bioInt2/bioIntDb.c 1.4 - lines changed: 643, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.4 - lines changed: 63, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntFrontend/index.html 1.1 - lines changed: 254, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.c 1.1 - lines changed: 112, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.h 1.1 - lines changed: 38, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.5 - lines changed: 24, context: html, text, full: html, text
• updated
  • src/hg/instinct/bioInt2/bioController.c 1.7 - lines changed: 37, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.c 1.6 - lines changed: 255, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.c 1.5 - lines changed: 21, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.c 1.4 - lines changed: 306, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.4 - lines changed: 20, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.3 - lines changed: 27, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioGeneLevel.c 1.3 - lines changed: 165, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioGeneLevel.c 1.2 - lines changed: 33, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.as 1.3 - lines changed: 12, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.3 - lines changed: 235, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.3 - lines changed: 82, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.3 - lines changed: 13, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.c 1.2 - lines changed: 42, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.2 - lines changed: 17, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.c 1.2 - lines changed: 213, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.h 1.2 - lines changed: 5, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.4 - lines changed: 9, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.3 - lines changed: 201, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.2 - lines changed: 3, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.5 - lines changed: 2, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.4 - lines changed: 71, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.3 - lines changed: 0, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/setCohorts.c 1.3 - lines changed: 15, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/setCohorts.c 1.2 - lines changed: 4, context: html, text, full: html, text
• added to UI code
  • src/hg/instinct/bioInt2/bioIntDb.as 1.4 - lines changed: 15, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.5 - lines changed: 943, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.5 - lines changed: 212, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.4 - lines changed: 17, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.c 1.3 - lines changed: 250, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.h 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.6 - lines changed: 8, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/setCohorts.c 1.4 - lines changed: 31, context: html, text, full: html, text
• fixed bug with container printing
  • src/hg/instinct/lib/json.c 1.2 - lines changed: 1, context: html, text, full: html, text
• fixed bug with correlated response
  • src/hg/instinct/bioInt2/bioIntUI.c 1.4 - lines changed: 2, context: html, text, full: html, text
• fixed another bug
  • src/hg/instinct/lib/json.c 1.3 - lines changed: 4, context: html, text, full: html, text
• added correlation code
  • src/hg/instinct/bioInt2/cohortCorrelations.c 1.1 - lines changed: 359, context: html, text, full: html, text
• added description field
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.4 - lines changed: 2, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.c 1.5 - lines changed: 28, context: html, text, full: html, text
• added search
  • src/hg/instinct/bioInt2/bioIntUI.c 1.6 - lines changed: 208, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.h 1.4 - lines changed: 1, context: html, text, full: html, text
• add description to clinical info
  • src/hg/instinct/bioInt2/bioIntUI.c 1.7 - lines changed: 6, context: html, text, full: html, text