src/utils/qa/proteins.csh 1.3

Index: src/utils/qa/proteins.csh
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/utils/qa/proteins.csh,v
retrieving revision 1.2
retrieving revision 1.3
diff -b -B -U 1000000 -r1.2 -r1.3
--- src/utils/qa/proteins.csh	20 Dec 2005 18:24:56 -0000	1.2
+++ src/utils/qa/proteins.csh	21 Mar 2009 00:29:25 -0000	1.3
@@ -1,147 +1,147 @@
 #!/bin/tcsh
 
 ############################
 # 
 #  03-31-04
 #  runs standard checks on several databases
 # 
 ############################
 
 
 set db1=""
 set db2=""
 set db3=""
 
 if ($#argv != 2) then
   # no command line args
   echo
   echo "  runs test suite on proteins databases. "
   echo "  compares new to previous databases for proteinsYYMMDD, "
   echo "    spYYMMDD, go."
   echo "  compares version on dev to that on beta."
   echo
   echo "    usage:  YYMMDD (new), YYMMDD (old)"
   echo
   exit
 else
   set db=$argv[1]
 endif
 
 
 set db1="proteins$argv[1] proteins$argv[2]"
 set db2="sp$argv[1] sp$argv[2]"
 set db3="go go"
 
 
 foreach db ("$db1" "$db2" "$db3")
 
   #  check update times vs. beta
   set dev=`echo $db | awk '{print $1}'`
   set beta=`echo $db | awk '{print $2}'`
   echo "dev = $dev   beta = $beta"
   updateTimesDb.csh $dev $beta
   echo
 
   # check for missing tables from beta (added tables are caught elsewhere):
   # gets table lists from updateTimes.csh output"
   echo "tables missing from dev that were on beta:"
   comm -13 $dev.tables $beta.beta.tables > saveBeta
   set missing=`wc -l saveBeta | awk '{print $1}'`
 
   if ( $missing == 0 ) then
     echo "   none"
   else
     cat saveBeta
   endif
   rm saveBeta
   echo 
 
   echo
   echo -------------------------------------------------
   echo "check rowcounts("$dev") against beta ("$beta"):"
   echo dev listed first:
   echo
 
   foreach table (`cat $dev.tables`)
     echo $table
     echo "============="
     hgsql -N -e "SELECT COUNT(*) FROM $table" $dev
-    hgsql -N -h hgwbeta -e "SELECT COUNT(*) FROM $table" $beta
+    hgsql -N -h hgofbeta -e "SELECT COUNT(*) FROM $table" $beta
     echo
   end
   echo
 
 
   # -------------------------------------------------
   # compare description of all tables with previous:
   
   echo 
   echo -------------------------------------------------
   echo "compare description of all tables with previous \
          blank if the same:"
   foreach table (`cat $dev.tables`)
     echo $table
-    hgsql -h hgwbeta -N  -e "DESCRIBE $table" $beta >  $beta.beta.$table.desc
+    hgsql -h hgofbeta -N  -e "DESCRIBE $table" $beta >  $beta.beta.$table.desc
     hgsql -N  -e "DESCRIBE $table" $dev > $dev.dev.$table.desc
     diff $beta.beta.$table.desc $dev.dev.$table.desc
     echo
   end
   echo
   
   
   # -------------------------------------------------
   # compare number of indices on dev vs beta,
   # and show indices of tables that do not match:
 
   echo
   echo " -------------------------------------------------"
   echo "compare number of indices on dev vs beta \
          blank if the same:\n"
   rm -f xxIndexx
   foreach table (`cat $dev.tables`)
     set indexNumDev=`hgsql -N -e "SHOW INDEX FROM $table" $dev \
        | wc -l | gawk '{print $1}'`
-    set indexNumBeta=`hgsql -h hgwbeta -N -e "SHOW INDEX FROM $table" $beta \
+    set indexNumBeta=`hgsql -h hgofbeta -N -e "SHOW INDEX FROM $table" $beta \
        | wc -l | gawk '{print $1}'`
     echo $table
     if ($indexNumDev != $indexNumBeta) then
       echo $table >> xxIndexx
       echo "  number of indices does not match:"
       echo "  dev  = $indexNumDev"
       echo "  beta = $indexNumBeta"
       echo
       echo "on dev, ${dev}:"
       hgsql -t -e "SHOW INDEX FROM $table" $dev
       echo
       echo "on beta, ${beta}:"
-      hgsql -t -h hgwbeta -e "SHOW INDEX FROM $table" $beta
+      hgsql -t -h hgofbeta -e "SHOW INDEX FROM $table" $beta
       echo
     endif
     echo
   end
   
   echo  "-------------------------------------------------"
   echo  "         change database.  leaving $db "
   echo  "-------------------------------------------------"
   
   echo
 end
   
-hgsql -N -h hgwbeta -e "SHOW TABLES" go > go.tables.push
+hgsql -N -h hgofbeta -e "SHOW TABLES" go > go.tables.push
 
   echo  "-------------------------------------------------"
   echo  "    list of go tables for pushing to beta is in file:  "
   echo  "       go.tables.push"
   echo  "-------------------------------------------------"
   
 
   echo
   echo  "-------------------------------------------------"
   echo  "    remember to request autodump when tables are on RR "
   echo  "-------------------------------------------------"
   
 
 rm -f xxIndexx
 rm -f *desc
 dumpEmpty.csh .