src/hg/utils/automation/HgAutomate.pm 1.24
1.24 2009/03/13 22:27:12 hiram
eliminate the duplicate hiveDataGenomes specification, been fixed elsewhere
Index: src/hg/utils/automation/HgAutomate.pm
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/utils/automation/HgAutomate.pm,v
retrieving revision 1.23
retrieving revision 1.24
diff -b -B -U 4 -r1.23 -r1.24
--- src/hg/utils/automation/HgAutomate.pm 7 Mar 2009 00:06:33 -0000 1.23
+++ src/hg/utils/automation/HgAutomate.pm 13 Mar 2009 22:27:12 -0000 1.24
@@ -35,9 +35,9 @@
makeGsub mustMkdir mustOpen nfsNoodge run verbose
),
# Hardcoded paths/commands/constants:
qw( $gensub2 $para $paraRun $centralDbSql $cvs
- $clusterData $hiveDataGenomes $trackBuild $goldenPath $images $gbdb
+ $clusterData $trackBuild $goldenPath $images $gbdb
$splitThreshold $setMachtype
),
);
@@ -474,12 +474,12 @@
#########################################################################
# Hardcoded paths/command sequences:
use vars qw( $gensub2 $para $paraRun $centralDbSql $cvs
- $clusterData $hiveDataGenomes $trackBuild $goldenPath $images $gbdb
+ $clusterData $trackBuild $goldenPath $images $gbdb
$splitThreshold $setMachtype
);
-use vars qw( $gensub2 $para $paraRun $clusterData $hiveDataGenomes $trackBuild
+use vars qw( $gensub2 $para $paraRun $clusterData $trackBuild
$goldenPath $gbdb $centralDbSql $splitThreshold );
$gensub2 = '/parasol/bin/gensub2';
$para = '/parasol/bin/para';
$paraRun = ("$para make jobList\n" .
@@ -488,9 +488,8 @@
'cat run.time');
$centralDbSql = "hgsql -h genome-testdb -A -N hgcentraltest";
$cvs = "/usr/bin/cvs";
-$hiveDataGenomes = '/hive/data/genomes';
$clusterData = '/hive/data/genomes';
$trackBuild = 'bed';
my $apacheRoot = '/usr/local/apache';
$goldenPath = "$apacheRoot/htdocs/goldenPath";