src/hg/lib/encode/encodePeak.as 1.6
1.6 2009/03/11 18:34:59 kate
The Q-value is log after all
Index: src/hg/lib/encode/encodePeak.as
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/encode/encodePeak.as,v
retrieving revision 1.5
retrieving revision 1.6
diff -b -B -U 1000000 -r1.5 -r1.6
--- src/hg/lib/encode/encodePeak.as 6 Mar 2009 17:40:30 -0000 1.5
+++ src/hg/lib/encode/encodePeak.as 11 Mar 2009 18:34:59 -0000 1.6
@@ -1,17 +1,17 @@
table encodePeak
"Peaks format (BED 6+)"
(
string chrom; "Reference sequence chromosome or scaffold"
uint chromStart; "Start position in chromosome"
uint chromEnd; "End position in chromosome"
string name; "The name... probably just a period"
uint score; "Score 1-1000"
char[2] strand; "+, -, or ."
float signalValue; "Measurement of average enrichment for the region"
float pValue; "Statistical significance of signal value (-log10). Set to -1 if not used."
- float qValue; "Statistical significance with multiple-test correction applied (FDR). Set to -1 if not used."
+ float qValue; "Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used."
int peak; "Point-source called for this peak; 0-based offset from chromStart (use -1 if no point-source called)"
uint blockCount; "Number of blocks"
uint[blockCount] blockSizes; "Comma separated list of block sizes"
uint[blockCount] blockStarts; "Start positions relative to chromStart"
)