src/hg/lib/encode/narrowPeak.as 1.4
1.4 2009/03/11 18:34:59 kate
The Q-value is log after all
Index: src/hg/lib/encode/narrowPeak.as
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/lib/encode/narrowPeak.as,v
retrieving revision 1.3
retrieving revision 1.4
diff -b -B -U 1000000 -r1.3 -r1.4
--- src/hg/lib/encode/narrowPeak.as 6 Mar 2009 17:40:30 -0000 1.3
+++ src/hg/lib/encode/narrowPeak.as 11 Mar 2009 18:34:59 -0000 1.4
@@ -1,14 +1,14 @@
table narrowPeak
"peaks of signal enrichment based on pooled, normalized (interpreted) data. It is a BED6+4 format"
(
string chrom; "Name of the chromosome"
uint chromStart; "Start position in chromosome"
uint chromEnd; "End position in chromosome"
string name; "Optional. Name given to a region (preferably unique). Use . if no name is assigned."
uint score; "Optional. Indicates how dark the peak will be displayed in the browser (1-1000). If '0', the DCC will assign this based on signal value. Ideally average signalValue per base spread between 100-1000."
char[2] strand; "Optional. +/- to denote strand or orientation (whenever applicable). Use '.' if no orientation is assigned."
float signalValue; "Measurement of average enrichment for the region"
float pValue; "Statistical significance of signal value (-log10). Set to -1 if not used."
- float qValue; "Statistical significance with multiple-test correction applied (FDR). Set to -1 if not used."
+ float qValue; "Statistical significance with multiple-test correction applied (FDR -log10). Set to -1 if not used."
int peak; "Point-source called for this peak; 0-based offset from chromStart (use -1 if no point-source called)"
)