src/inc/bigBed.h 1.9

Index: src/inc/bigBed.h
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/inc/bigBed.h,v
retrieving revision 1.8
retrieving revision 1.9
diff -b -B -U 4 -r1.8 -r1.9
--- src/inc/bigBed.h	10 Feb 2009 22:07:49 -0000	1.8
+++ src/inc/bigBed.h	15 Mar 2009 00:17:52 -0000	1.9
@@ -31,28 +31,32 @@
  * parsing the bed file. The startBuf and endBuf are used to hold the ascii representation of
  * start and end.  Note that the interval->rest string will have zeroes inserted as a side effect. 
  * Returns number of fields in row.  */
 
-boolean bigBedSummaryArray(char *fileName, char *chrom, bits32 start, bits32 end,
+boolean bigBedSummaryArray(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,
 	enum bbiSummaryType summaryType, int summarySize, double *summaryValues);
 /* Fill in summaryValues with  data from indicated chromosome range in bigBed file.
  * Be sure to initialize summaryValues to a default value, which will not be touched
  * for regions without data in file.  (Generally you want the default value to either
  * be 0.0 or nan("") depending on the application.)  Returns FALSE if no data
  * at that position. */
 
-boolean bigBedSummaryArrayExtended(char *fileName, char *chrom, bits32 start, bits32 end,
+boolean bigBedSummaryArrayExtended(struct bbiFile *bbi, char *chrom, bits32 start, bits32 end,
 	int summarySize, struct bbiSummaryElement *summary);
 /* Get extended summary information for summarySize evenely spaced elements into
  * the summary array. */
 
+struct asObject *bigBedAs(struct bbiFile *bbi);
+/* Get autoSql object definition if any associated with file. */
+
 void bigBedFileCreate(
 	char *inName, 	  /* Input file in a tabular bed format <chrom><start><end> + whatever. */
 	char *chromSizes, /* Two column tab-separated file: <chromosome> <size>. */
 	int blockSize,	  /* Number of items to bundle in r-tree.  1024 is good. */
 	int itemsPerSlot, /* Number of items in lowest level of tree.  64 is good. */
 	bits16 definedFieldCount,  /* Number of defined bed fields - 3-16 or so.  0 means all fields
 				    * are the defined bed ones. */
+	char *asFileName, /* If non-null points to a .as file that describes fields. */
 	char *outName);   /* BigBed output file name. */
 /* Convert tab-separated bed file to binary indexed, zoomed bigBed version. */
 
 #endif /* BIGBED_H */