src/hg/blastToPsl/tests/makefile 1.17
1.17 2009/04/12 03:47:20 markd
added support for PSI BLAST madness
Index: src/hg/blastToPsl/tests/makefile
===================================================================
RCS file: /projects/compbio/cvsroot/kent/src/hg/blastToPsl/tests/makefile,v
retrieving revision 1.16
retrieving revision 1.17
diff -b -B -U 4 -r1.16 -r1.17
--- src/hg/blastToPsl/tests/makefile 22 Aug 2007 02:49:47 -0000 1.16
+++ src/hg/blastToPsl/tests/makefile 12 Apr 2009 03:47:20 -0000 1.17
@@ -6,9 +6,10 @@
all:
test: protMrnaTest protDnaTest mrnaDnaTest mrnaDnaxTest \
blockBugTest identityBugTest protMrnaEval1Test protMrnaEval2Test \
- longDbNameTest multiLineDescTest tblastxTest tblastnTest
+ longDbNameTest multiLineDescTest tblastxTest tblastnTest \
+ blastpPsiTest
#tblastnDbFirstTest megaBlastTest
protMrnaTest: mkdirs
@@ -99,8 +100,15 @@
${blastToPsl} input/970.blast output/$@.psl
pslCheck -verbose=0 output/$@.psl
diff -u expected/$@.psl output/$@.psl
+# PSI-BLASTP
+blastpPsiTest: mkdirs
+ ${blastToPsl} -scores=output/$@.bscores input/blastpPsi.blast output/$@.psl
+ pslCheck -verbose=0 output/$@.psl
+ diff -u expected/$@.psl output/$@.psl
+ diff -u expected/$@.bscores output/$@.bscores
+
clean::
rm -rf output
mkdirs: